LOCUS JO304671 1421 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c33769_c mRNA sequence. ACCESSION JO304671 VERSION JO304671.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 1421) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1421) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1421 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 339 a 314 c 346 g 422 t ORIGIN 1 cgctgaatgg acggaggagg ggaggggagg gggaatccaa cgtagttcca gatctcaata 61 ataaatcact tctcgaggaa gaacaagagg ttggtggctg ggcgggtacg ctgccagcgc 121 acccctattg ccgatctatt cccgcggttc aacactcttg ccttctctcc ccaactgctc 181 ctcctctcag tattggtcga atagggcatc ggccagagcg tgttctctct tctcgacgaa 241 tactcgacgg cggcggaaga tggcgaaact tgtagagggc agtgctgatg tcctcaatgg 301 ttttggaaca cttggcgcgc tctcgttgtc cattgtgtca tcagtttcaa tcgttatttg 361 caacaaggca ttaatatcta ccttatcttt caacttcgca acaacgctga caagctggca 421 tttagtggtg acgtttttgt cgctatatac ggcaaagaat ctagggtttt ttgagcataa 481 accgattgat aaatctcggg tcgtcatatt tggcatatgt aatggcatct caatcgggtt 541 tttgaatttg agtcttgggt ttaattccgt tgggttttat cagatgacga agcttgccat 601 tatccctttc acggtccttc tggagacaac tatgtacagg aaacattttt agtcgcaatg 661 tcaagctttc attgcttata ttgctggtgg gtgttggtat tgctaccgtc actgacttcg 721 agctgaactt cttaggaacg gtcttgtcca tcctcgccat tgtaacgaca tgtggcgctc 781 aaatagcaac aagtacgttg caaaagatgt atcatatctc ctccactcaa ctgttgtacc 841 aatcttgccc ttacatggcg gcaaccttgc tagtaacggg tccatttctt gaccaagcac 901 tcactgagca gagcgttttc gaatttgatt acagtatacc tgtcgtgtcg tgtattcttc 961 tgacatgttt catagccgtc ctcgtcaact tcagcacctt catggtgatt ggcaagacat 1021 ccccagtaac ataccaggtg cttggtcatc tgaagacatg cttggtcttg atgggaggct 1081 ttatgttttt ccgtgcaccc gcagttttgc ggaatattat tggaattctc attgcagtcg 1141 gtggcatggt tctctattcg tatgtgaata ttaaggaggg agcagccgca aaaaattcac 1201 agggagacga taagatgaaa accccactta tgaccactct gagcgaaaaa ggatgatgta 1261 accaatcttt tgtaactcaa aaggagggaa aggaggaagt gtgagggaag aagtaggctg 1321 ctccctttcc attttgtctc tgtgtcatgt cagctgggat tatgctacgt cgtttgagcc 1381 tgtgttcgag cttgcgttat gaaaatgttg ccaagtcagc g //