LOCUS       JO304671                1421 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c33769_c mRNA sequence.
ACCESSION   JO304671
VERSION     JO304671.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 1421)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1421)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1421
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          339 a          314 c          346 g          422 t
ORIGIN      
        1 cgctgaatgg acggaggagg ggaggggagg gggaatccaa cgtagttcca gatctcaata
       61 ataaatcact tctcgaggaa gaacaagagg ttggtggctg ggcgggtacg ctgccagcgc
      121 acccctattg ccgatctatt cccgcggttc aacactcttg ccttctctcc ccaactgctc
      181 ctcctctcag tattggtcga atagggcatc ggccagagcg tgttctctct tctcgacgaa
      241 tactcgacgg cggcggaaga tggcgaaact tgtagagggc agtgctgatg tcctcaatgg
      301 ttttggaaca cttggcgcgc tctcgttgtc cattgtgtca tcagtttcaa tcgttatttg
      361 caacaaggca ttaatatcta ccttatcttt caacttcgca acaacgctga caagctggca
      421 tttagtggtg acgtttttgt cgctatatac ggcaaagaat ctagggtttt ttgagcataa
      481 accgattgat aaatctcggg tcgtcatatt tggcatatgt aatggcatct caatcgggtt
      541 tttgaatttg agtcttgggt ttaattccgt tgggttttat cagatgacga agcttgccat
      601 tatccctttc acggtccttc tggagacaac tatgtacagg aaacattttt agtcgcaatg
      661 tcaagctttc attgcttata ttgctggtgg gtgttggtat tgctaccgtc actgacttcg
      721 agctgaactt cttaggaacg gtcttgtcca tcctcgccat tgtaacgaca tgtggcgctc
      781 aaatagcaac aagtacgttg caaaagatgt atcatatctc ctccactcaa ctgttgtacc
      841 aatcttgccc ttacatggcg gcaaccttgc tagtaacggg tccatttctt gaccaagcac
      901 tcactgagca gagcgttttc gaatttgatt acagtatacc tgtcgtgtcg tgtattcttc
      961 tgacatgttt catagccgtc ctcgtcaact tcagcacctt catggtgatt ggcaagacat
     1021 ccccagtaac ataccaggtg cttggtcatc tgaagacatg cttggtcttg atgggaggct
     1081 ttatgttttt ccgtgcaccc gcagttttgc ggaatattat tggaattctc attgcagtcg
     1141 gtggcatggt tctctattcg tatgtgaata ttaaggaggg agcagccgca aaaaattcac
     1201 agggagacga taagatgaaa accccactta tgaccactct gagcgaaaaa ggatgatgta
     1261 accaatcttt tgtaactcaa aaggagggaa aggaggaagt gtgagggaag aagtaggctg
     1321 ctccctttcc attttgtctc tgtgtcatgt cagctgggat tatgctacgt cgtttgagcc
     1381 tgtgttcgag cttgcgttat gaaaatgttg ccaagtcagc g
//