LOCUS JO304529 709 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c33540_c mRNA sequence. ACCESSION JO304529 VERSION JO304529.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 709) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 709) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..709 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 160 a 144 c 207 g 198 t ORIGIN 1 tcgttgctgc agccccactc tgtaatctcg cgcacttcca ctcagactct aagttttgga 61 agacagctta gggttctcca caaccaccat agctcgtttt tcgtgccaat cagcggtcac 121 tttgaattgg atgacggaca tcgtgcagta ctgttcgaca ggttgcaagg tgtcatggaa 181 accacggccg gggaggggcc acactttctt gtaccatggc ttcaaaagcc gtacatcttt 241 gatgtaagga cgcatccaag gtcgatcact gtggtgactg gaacaaaagc gcgaatccca 301 tgtataagat ggtttggagt ggagggagat tgtaacgtgt tggtgcttga catttttggg 361 gtcccagctt ggaagaccgt ttcaatttct gcagtcggaa gttcactttg aagacgttat 421 tgatgttggc ggaccagctg ccaaatttag gcgtggacga gtatgggtac cgacttgcac 481 ttgaggctat gctgacttgc acttgaatcc gtgctgactt tgagttgctc gcatggtttc 541 cgatgtttct ttgcagggta gggggtatgg gatagtaggt agaggctttg atggaaggct 601 gcaggtgttt tcattcgaag ggagtgcaac tggacaggca acagggaggg gtgcattctt 661 gtaggaatgt ctcttgtatt ttaaatttca agggggtgca aggcacaca //