LOCUS JO304355 447 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c33262_c mRNA sequence. ACCESSION JO304355 VERSION JO304355.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 447) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 447) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..447 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 106 a 110 c 130 g 101 t ORIGIN 1 ttgtggacat cgacaggggt gacgatcatg cacatcatca gcatcatcac aagcaccatc 61 agcggcagca ggaggcccca tctccatcgc ggtgacgttg caacgctgct aatcttcgtc 121 ttcatttttc ctgcactgtg cgtgtgcgtg tgcgttccgt tgcctgtgtc acctttcgta 181 gcctgtcgtc acgtgcgtcg tcgttggcgt agggggtgaa tgctgagttt gctgacgtgt 241 cgattgtcgt tgtcgtcgtt gccattggcg cgagtcgtga cacaacaaca acgagaacta 301 caacagagcg cgaggtcgag tgcgtaatca gaagacaaga gtacgcgagt acgctagtac 361 gctagaacgt cgacatcgag aagtagtgaa catgaactga aacgatggaa ggacgcagga 421 gcggcacgac acaaatgtca caagttg //