LOCUS       JO304234                 525 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c33066_c mRNA sequence.
ACCESSION   JO304234
VERSION     JO304234.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          179 a          111 c           79 g          156 t
ORIGIN      
        1 gaataatatt ggatttttta gtttggcaag agaagatttt aacaaatctc tttattctaa
       61 caaaaaactt tttcttcaat tcaacaaaag aacatttaaa ttcgtttatt cgggttatgg
      121 agctcaaaga tttgctaaac aacggtgatg aaggacttcg aaggaacatt gtgaaagtgg
      181 acaatgaaat cccgaacata gtggcgattt ctcacactga tgcctctaac gtcactgcaa
      241 ataacactcc aacaattctt tctccttcga aacaatacac caattctttt aatgcgattc
      301 cccaacttcc actcaacgca agcagtgatt tctcaaactg ctaagtcgac aggcatgact
      361 gttcccgttg ctactccagc aagcaatctt ccaagcatgg gttctttttt ccctcaatat
      421 aatttagtaa atttaacaaa tgactggcgg caacaaattc ctcaagtgaa tggttatatg
      481 caacaacaaa atcaagcata tcaacataat aatagcaact tttgc
//