LOCUS JO303933 509 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c32586_c mRNA sequence. ACCESSION JO303933 VERSION JO303933.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 509) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 509) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..509 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 200 a 88 c 97 g 124 t ORIGIN 1 agctctctat ccagatgcga tgaaaacagg atggatgaca atgcaagtca ctcgtaaagg 61 aaaattaatt caaaaatgga aacgatggtg gttcatttta cttcctcaaa gtttgctgta 121 ttttaagaaa ccaggggata gttctcctta tggaacaatt gatatgaaaa ctgccagagt 181 tgtcaagaga tcaagtggag agaataagaa attctgtttc tgtattcaaa cacatcagtt 241 tgatccaaag aaacaatcga caaacaattc tcctgccact cccaatgcaa atgcgaatct 301 ccgaactgtc agtaaaactt ctctcaagtc agaaacactt ttgggagaat cgaaaatgga 361 aacttatgaa ctgagtctcc caagtgaacg agaacttcaa tcttggacaa aagtattggg 421 aaaagcaatg gatggactaa agaatgaaga aaagaatacc aaataccaaa gaaaaaagaa 481 taaaagagaa atgagatctt attccatct //