LOCUS JO303306 509 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c31547_c mRNA sequence. ACCESSION JO303306 VERSION JO303306.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 509) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 509) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..509 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 112 a 153 c 81 g 163 t ORIGIN 1 gactactaca tgtttaatgc tcatcaggtt cttccattgt gctcctcccc ttcctcggag 61 tccttcgtcc gtggtccatc cggctcctgc tctgctcccc ctcttctcct caatttctct 121 atctttgcat ctttctccta aacttgcttc atatgaacac ccttataaaa gaaccttata 181 aaacacccct ataaatacac cttgtcttat cgctcctcgc gccttctctg tccgcatcgc 241 tactcttctc ttttggcctg ttcgtgcccg ctgctgcgcc tgccctcctc cttcatcctc 301 cgtgcttttc cgtttgaatg ccaccaaacg gatcaagata gactaagctt aagttccata 361 gtgggctgag gagtatagct tcttggaccc actgtgcaaa tcttaaatcg acattgcaaa 421 tcaaggtcct catgacatga attgtgaggc acattgagaa gtactgctaa cttttttaaa 481 tcccaaggac agaaagatac aaacttttt //