LOCUS JO303195 500 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c31362_c mRNA sequence. ACCESSION JO303195 VERSION JO303195.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 500) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 500) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..500 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 134 a 86 c 178 g 102 t ORIGIN 1 ccaccgcgag aatagtggtg cggaaaggag gaacgggaga tggcgacgcc ggtcgtcgtt 61 ccgctcggtg cgctctcagc aaggttaacg gtcggcgtcc tcaatccgct ccgtcatcat 121 gaaggcggtc ttgtgtgggg actccggcaa aacgtatcgg gagcgcgacc aaaaaaggcg 181 ggagatgtgg tgacgtggcg gtgggtgaca aaaaatggaa ttgatgaaag aggtcataga 241 agcgaaaagg cgggaacatg ctggttgact acggataagg ataaggataa ggataaggtt 301 tgtttcggtg gcaggtattg ggaacggaag acgtggagac gaggaggaaa gagggtacat 361 aggaagagac cggggagacg tgggcatggt caatggcttt tccaatgtag cacatgtgca 421 tagagcagct gaactatagt gctgaggtcg atttattgag agaattcgct gtttttaagc 481 aatggcagtt ggtccgttag //