LOCUS JO303014 514 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c31057_c mRNA sequence. ACCESSION JO303014 VERSION JO303014.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 514) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 514) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..514 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 173 a 68 c 100 g 173 t ORIGIN 1 caatgataca tctgtacaaa gtgatatcaa acattttcct ttttccgtca tcgaaaataa 61 aggaaaacca gtagttcaat taaatactcg ttatggagag aaattattta cacccgaaga 121 aattttctgc gatgattctc gggaaaatgc gtgatattgc tgaaggattt cttgatgaga 181 aagtcaaaaa tgctgttgta actgttcctg cttattttaa tgatgctcaa cgacaagcaa 241 ccaaaaaatg ctggaaccat tgctggttta aatgtagtca gaattattaa tgaaccaaca 301 gcagcagcaa ttgcttttgg attagataaa atgaaggaat ggaaaggatc gaaaaatgtt 361 cttgtctttg atttaggtgg tggaacattt gatgtttcat tattaacctt tgatagtggt 421 gtctttgaag ttacttgcaa ctaatggtga tacacattta ggtggtgaag attttgatca 481 acgtattatt gattatttta ttaaattata taag //