LOCUS JO302933 537 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c30910_c mRNA sequence. ACCESSION JO302933 VERSION JO302933.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 537) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 537) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..537 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 146 a 103 c 81 g 206 t ORIGIN 1 aagatcagat tcagctgatg cactttctgc tccatccgtg gaacgtcgac aacgacattc 61 cattcatcgg ctacaaatgc aaaatgaaca agcgactaat tcagattaaa attcagtatc 121 atattcttgt cggtgctatt cttttctctc tcacttgttt tttttcctct tgtccacaat 181 tgtgtgtatc tgtagaaatg aaaatgagac aaacaaaacc ctaagaagca aagatgaatc 241 ttttgaacag atcccaggga aacattgaaa tgaatcgttt caccgtcctt actcttgctc 301 cacccggtga gcattattat ttgtttgttt attgtcaatt tcgatgtaaa tctacttttt 361 tttaattgtt catctcgtta gtctcttctt cttcttctct gtctctctct ctatttgggc 421 atctaatcaa ttacaacaaa caataataat atcagaatta atgtgtgtgt atatgtgtgt 481 gcrtgtgtgt ttatatgtat taaatgttaa tcatttgttt ttatttctct tctgtag //