LOCUS JO302683 479 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c30453_c mRNA sequence. ACCESSION JO302683 VERSION JO302683.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 479) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 479) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..479 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 81 a 134 c 147 g 117 t ORIGIN 1 gaatgcacca ttcttgtgaa ggtactcctg caagtcgccc tgcgctgcgt agagctgggc 61 gaaccagccg gtgtttgtcg cgaccagcgg tacgatgttc ggatgatgtt gcgggtgggt 121 tggtgggaaa cttatgttct taagcacttc gaattcgttg agccagtcct tgccggcctc 181 ggcggtcatg ggaatcttaa acaccacgac ctttcccttg taggtgccct tccagagcac 241 ggcctgaccg ccgctgccga tcttcttctc gaacgtgcag tcgtctattt tcggagcttc 301 cggatcgaca cgcggtgccg cgctcactga gggaagcgaa ggcgatgcag gtagagcact 361 ggtgctcggc gtaagcgtcg cgctggccgc aaggcgttcc ttcgcctcag ttagttcctt 421 gcggagggtc tctatctcat ccttgcggag gatgaggtca cggatcgtct cctgcgcaa //