LOCUS JO302242 695 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c29634_c mRNA sequence. ACCESSION JO302242 VERSION JO302242.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 695) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 695) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..695 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 262 a 145 c 113 g 174 t ORIGIN 1 ctaattggga acgaaatcct attgctgaga tgaaagaaga ccgaaggtta atgaacagtt 61 ttttctatgg tccagtgcaa tcgaacaaag gtgcaacggg aaatgatgat gatgatgatg 121 atgaaaattt ctcagatgca gaagatacac ctaaacaaat gacatcatct caaataaaac 181 aaacctctgc cgctgctcct tctccactgc aaactaccaa taaaccaaca actgaatcag 241 caacaattag taaactcgtt ccacctgtgg ttcaatcagt agcaagttca tctgatcgtt 301 ctcattctca atcttcaatg aatcgttcaa atgttccacc gacaacaaaa ggttcaacat 361 ctccaccacc atcgttctca tcatcggcaa aaccaataac aacaactaca gcaacaacaa 421 atgctccacg taaaacatcg atgagcgacc tggaaaaaga attacaagaa ttcgatatcg 481 acctcgataa agatgatgta agcgacgttg aaaatggaca aacaacagga gttttttaag 541 aaaactactg acgaggatga ggatattcaa tttgatgatg atgatgtcga tgaatttctc 601 aaagatactt gaattatttc gaatatcatc atgtgatata aaatgtatca agttgtctat 661 canattccat acacatacaa gcacatcaaa taaca //