LOCUS JO295551 560 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c20141_c mRNA sequence. ACCESSION JO295551 VERSION JO295551.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 560) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 560) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..560 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 162 a 130 c 149 g 119 t ORIGIN 1 atacttgctt attcaccggg atgagaaggc aataaaaaat gtctgcgctt attttgccag 61 agaaatttca gcacattctt cgtgttttga acaccaacat tgatggtcgc atcaagatac 121 cgttcgccat gacggccatt aagggtatcg gtagacgttt ctcgcacgtt tgcttgcgca 181 aggccgacat cgataccaac aagagagctg gtgagctgac cgaggaggaa atcgacagag 241 tcatgacgat tgtggccaac ccgcgccagt acaagatccc cgactggttc ctgaacagac 301 agaaggatat caaggacggc aagtacaccc aggtgacgtc caacggtctg gacaacaagt 361 tccgtgagga cattgagcgc ctgaagagaa tccgctcgca cagaggcttg agacactact 421 ggggtgtccg tgtgagaggt cagcacacca agactactgg cagacgcggt cgcactgtcg 481 gtgtgtccaa gaagaaggcg aagtaagacc atatggatag cgcctgttat cgaattaata 541 tttgataata tgaacacaag //