LOCUS JO290857 673 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c13710_c mRNA sequence. ACCESSION JO290857 VERSION JO290857.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 673) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 673) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..673 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 228 a 113 c 118 g 212 t ORIGIN 1 tggttaccaa ttttaaaaat tcttaaattg gaacaacttt gaaaaagata taccgaatta 61 tagtgcactg gatatttgtg aagcttgggg cattaaaacg aggatttttt aacagcgaaa 121 gcatmacgtc cagatgttta tcgagcagct aatcatattc ttcgtttagc actcgatggt 181 cgtattaatt taattcttcg tccacctggt tttactgttg ataaagaacg atacatatct 241 gatcctcgtg caactgatct tgaacaacaa attcaatcag ctgttgataa acaaaaacgt 301 cctgatagta gtatatccgg tggtgatgat agtgaagcat ttccaacaag tgatgatcat 361 caattagcat cttgtagtgc atcagcaagt gatcaaggtg ctgaattcgt tgaagatggc 421 aatcgatttg atctattaac acgtgaaaat ggaaacaaat tcgttactaa atccgaaaaa 481 aattaccatt cgaaaaaatc gacaagattc aaataacaat aatgatcaag ccgatgaaga 541 agaagtagat tgaatttctt ctccgaaaca gtcatcaaca tttgatatgt atagctcaat 601 gaacagattc tttctctctc tctctcttct ttttktttaa agaagtgatt gatgtatatc 661 ccgcttgaaa gtt //