LOCUS JO290344 729 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c13050_c mRNA sequence. ACCESSION JO290344 VERSION JO290344.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 729) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 729) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..729 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 228 a 93 c 166 g 242 t ORIGIN 1 ttataatgtc aatgaataag acttgatatt tatttattgt tattattttt ttgagatgta 61 agcaaacaaa tcactataaa gagaacgttc cacacataca tgcatactct cggtaagggt 121 aattaaagaa aaaataggaa atgtagaaag agaatagcga aagaagaaga aaaagaagaa 181 ggtttatgcg gtgatgcata acattattga gctaagaaga tgaaaaaatg atttgcataa 241 acagacatac tgttactccg ttcgttatta gaaacatgtg catgctagaa catccaacca 301 ttgttaaatg ttagggtgat tgatagagaa ggatagagtg aataagaatt gtaatattaa 361 tatagtcaca aagatgagaa ttaatttgat catgatgctg gagcatcagc tgttgaattt 421 aaagtcgcat cgttttcgag tgatgatgca cctgatgatg aagcaccatc agcaacagca 481 ccttcagatg aaatagcttg atcatcaaca ctttgacttt gaacttgtga ttcgtcttgt 541 gatggagtct gggctggggc tggggcggat tgttgttgtt gttgttgttg ttgttgttgt 601 tgttgttgtt gttgttgttg tctgggtgct tcaccagcga tggttcgaga gacattttga 661 attcgttgag aaaatgattc ttctcgtagt ttcggtcgta ttcttttgct tcgattctat 721 atattgatc //