LOCUS       JO290344                 729 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c13050_c mRNA sequence.
ACCESSION   JO290344
VERSION     JO290344.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          228 a           93 c          166 g          242 t
ORIGIN      
        1 ttataatgtc aatgaataag acttgatatt tatttattgt tattattttt ttgagatgta
       61 agcaaacaaa tcactataaa gagaacgttc cacacataca tgcatactct cggtaagggt
      121 aattaaagaa aaaataggaa atgtagaaag agaatagcga aagaagaaga aaaagaagaa
      181 ggtttatgcg gtgatgcata acattattga gctaagaaga tgaaaaaatg atttgcataa
      241 acagacatac tgttactccg ttcgttatta gaaacatgtg catgctagaa catccaacca
      301 ttgttaaatg ttagggtgat tgatagagaa ggatagagtg aataagaatt gtaatattaa
      361 tatagtcaca aagatgagaa ttaatttgat catgatgctg gagcatcagc tgttgaattt
      421 aaagtcgcat cgttttcgag tgatgatgca cctgatgatg aagcaccatc agcaacagca
      481 ccttcagatg aaatagcttg atcatcaaca ctttgacttt gaacttgtga ttcgtcttgt
      541 gatggagtct gggctggggc tggggcggat tgttgttgtt gttgttgttg ttgttgttgt
      601 tgttgttgtt gttgttgttg tctgggtgct tcaccagcga tggttcgaga gacattttga
      661 attcgttgag aaaatgattc ttctcgtagt ttcggtcgta ttcttttgct tcgattctat
      721 atattgatc
//