LOCUS       JO289578                1037 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c12023_c mRNA sequence.
ACCESSION   JO289578
VERSION     JO289578.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1037)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          213 a          277 c          235 g          312 t
ORIGIN      
        1 acagttgtat ctcctttgtc tcttcccata gtaccctcta cgctttgatt tcttttgctt
       61 tatcccccct ctcccccgac ccataatttg ctacgtaatc aaagtttaaa ctttaaacat
      121 taaaattcaa gcgtttctta ggatttcaag aatactccat ggagccaccg gtcattcccg
      181 acttcagtgt ccaagaagag attgacgatc accaacgtgg ggtcactgat cattcctgac
      241 ttcggtgtcc ttgaaaaggg ttacgttgaa cctgcggcat tgcagattgc aagataaggc
      301 aggacatggc ggcatagttt cctgagtacg acgggctttt actcctatct tgaaagggtg
      361 caggaaaggt gcccggaatg agacgttcat cgtcggcgac agggtggtgc aacaaagggc
      421 ttgcaatcat caggtattga tagcattgtg gaacagccag cctgctatca ttggttgcag
      481 tcggagcctc agcaggaaag tatgtgctgt tctactgaag ctattgaaag ggatgcacac
      541 cggcagttgg aagttaggag tctacttagg tgggtaaggc aggacatggt agacgtgttg
      601 ggaagggccc cctcagagca gcacagtggc ttttgtcgat ttcggggttt gggagctttc
      661 ttcacattga atcattcgct gttgaggtat tgggcctctg cttcgtgccc attttttcag
      721 tccaaagagc aagcattgca gtcacagctg ccacgcagta ttgttctggg gcagcgtgct
      781 tgatctcaag aaatatttat atggtttcat tgacctttgg tcttcgctcc tgtttctttt
      841 gccattcatc cctccttttc gtgaaacctc gtttctgcct tgcatgtcga tgtcctctcc
      901 attgtctgct gttagtgcca caccttccgg tccgccgtcc caccccttgc ccctccctat
      961 ctcctgctct ctctcacctt cttgtcctca ctttcacctc cccaactgca ccctcgtctc
     1021 actgtctccc ttcctcc
//