LOCUS JO289578 1037 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c12023_c mRNA sequence. ACCESSION JO289578 VERSION JO289578.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 1037) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1037) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1037 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 213 a 277 c 235 g 312 t ORIGIN 1 acagttgtat ctcctttgtc tcttcccata gtaccctcta cgctttgatt tcttttgctt 61 tatcccccct ctcccccgac ccataatttg ctacgtaatc aaagtttaaa ctttaaacat 121 taaaattcaa gcgtttctta ggatttcaag aatactccat ggagccaccg gtcattcccg 181 acttcagtgt ccaagaagag attgacgatc accaacgtgg ggtcactgat cattcctgac 241 ttcggtgtcc ttgaaaaggg ttacgttgaa cctgcggcat tgcagattgc aagataaggc 301 aggacatggc ggcatagttt cctgagtacg acgggctttt actcctatct tgaaagggtg 361 caggaaaggt gcccggaatg agacgttcat cgtcggcgac agggtggtgc aacaaagggc 421 ttgcaatcat caggtattga tagcattgtg gaacagccag cctgctatca ttggttgcag 481 tcggagcctc agcaggaaag tatgtgctgt tctactgaag ctattgaaag ggatgcacac 541 cggcagttgg aagttaggag tctacttagg tgggtaaggc aggacatggt agacgtgttg 601 ggaagggccc cctcagagca gcacagtggc ttttgtcgat ttcggggttt gggagctttc 661 ttcacattga atcattcgct gttgaggtat tgggcctctg cttcgtgccc attttttcag 721 tccaaagagc aagcattgca gtcacagctg ccacgcagta ttgttctggg gcagcgtgct 781 tgatctcaag aaatatttat atggtttcat tgacctttgg tcttcgctcc tgtttctttt 841 gccattcatc cctccttttc gtgaaacctc gtttctgcct tgcatgtcga tgtcctctcc 901 attgtctgct gttagtgcca caccttccgg tccgccgtcc caccccttgc ccctccctat 961 ctcctgctct ctctcacctt cttgtcctca ctttcacctc cccaactgca ccctcgtctc 1021 actgtctccc ttcctcc //