LOCUS JO289405 518 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c11788_c mRNA sequence. ACCESSION JO289405 VERSION JO289405.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 518) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 518) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..518 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 135 a 133 c 124 g 126 t ORIGIN 1 tcttcgtact tgatgttgcc ttccaaatct tcgcgggttt cggtgaactt gaaaatcttg 61 tcaacttcct cgtcggtgag acgctcgccg agcgaagaaa gcacgtgccg gacttcggcc 121 gccgaaatga aaccttggcc ttcacgatcg aaggtcttga aagcttccat aaattcggcg 181 aaggtgccag agtccttgat ttggctgact tcttggtaga ctggcaacag ttcttcgaac 241 ttgtactgct tctcacccat ttgcttggta ccaccgtgct tcaggacaac ttcgttggtg 301 gggttcaggc cgcaacaccg cagaacgtcg ccaaccttgg cgccatcgac gaagccatcg 361 cgaccatccc aaaagtcgaa aaggtcgaag acttcgcgaa ccttgtcgat ttcgtcagat 421 gagagagaca ttatgaactg ctgcgaatgt tatgaaactg caacaaaaaa agtacggaac 481 taacaagcta taacacttgg tgatgacctt agacacaa //