LOCUS JO289319 1426 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c11665_c mRNA sequence. ACCESSION JO289319 VERSION JO289319.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 1426) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1426) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1426 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 382 a 410 c 248 g 380 t ORIGIN 1 taaagtcgaa attatatccc atcgcgttga tcttgctgtg ccattgcact cccacatata 61 cactttcctg ctcgacgtgg agtaacagtt atataacact tccgtcttca cgcaaaacac 121 ctcccattta gaaatcccca tatacttcta tttcacgtta acacatctcc tctgccacta 181 agggcatact cagactagtg tttttctgct agcattcaca atgaatgtgg gatagattcc 241 agaccaaata cattgcagaa tctgctcggg aaagccaagt gtgagtatgc tctaagctgc 301 acaccatctc ccattggctc acattgcctc cttgttgtat gttagcacca ctgttccagc 361 atgcagctgt atatcgcaaa cacaacgtcc cagatcaact caaacactcc ttgcataaga 421 aaagagcaac cccgtcacct cattcagcaa cagcaattct gatccaaacc caggctgacg 481 ggtctcgcat cttctgacag tctcctgatt gatttcctga tactgtctct gcacatgggt 541 gcttgagagt gattaagcag agatgtgact gggctgcagt gacgtccctc ctgatgcccc 601 accctgccac tcactcgaaa ttagacattt acttccagct gctaacatcc ggacaagatt 661 gcagtcatcg ggatgttgac aactgattgc agatcaacgt cgatgaaact cttgtcgtgg 721 acaacttaat atcgcaacgt cagttgtggc taactttcca tcctcatgga acagaagtta 781 tggatgcatt cctggtccac tgggtcaatg ttcctggttc attacctggc tccttcattc 841 acaaccagga acaaagagtt acagatccca ctgctccatc gaaatgagtt gcactgctgg 901 accactgctg gaccaccgtc cacagcgtgc agagcttcac tcccaaatag tagttgaata 961 accaactaat taattagaaa atgaatgaat gaccccttct ttcagacctg cactaatcta 1021 aatcgacata acgagtcagg cccgctcaac cgcacgattc aactcgagaa ccaaatgcaa 1081 gctctgaata aagcaatagt cagggctctc tatcatccag caaagtaaac actatccact 1141 ccgggattga gaaccaagca ctggtgcggc cagccagagt ttcccatcct ccttgtctaa 1201 tccatcacag atccgcgtat tccgtgcccc tttccttgtt ccatccatca gttggtctct 1261 ccatttgtct csckssawyt ccttttaatc cttatattca tcaatctcaa gacattcacc 1321 catccacata tctacacacc tacacatcac acatccgtgc attcatccag ctaagcactg 1381 tttcatactg actctttgtg aagactcagc tcttcgcctg tgcctg //