LOCUS       JO289319                1426 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c11665_c mRNA sequence.
ACCESSION   JO289319
VERSION     JO289319.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 1426)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1426)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1426
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          382 a          410 c          248 g          380 t
ORIGIN      
        1 taaagtcgaa attatatccc atcgcgttga tcttgctgtg ccattgcact cccacatata
       61 cactttcctg ctcgacgtgg agtaacagtt atataacact tccgtcttca cgcaaaacac
      121 ctcccattta gaaatcccca tatacttcta tttcacgtta acacatctcc tctgccacta
      181 agggcatact cagactagtg tttttctgct agcattcaca atgaatgtgg gatagattcc
      241 agaccaaata cattgcagaa tctgctcggg aaagccaagt gtgagtatgc tctaagctgc
      301 acaccatctc ccattggctc acattgcctc cttgttgtat gttagcacca ctgttccagc
      361 atgcagctgt atatcgcaaa cacaacgtcc cagatcaact caaacactcc ttgcataaga
      421 aaagagcaac cccgtcacct cattcagcaa cagcaattct gatccaaacc caggctgacg
      481 ggtctcgcat cttctgacag tctcctgatt gatttcctga tactgtctct gcacatgggt
      541 gcttgagagt gattaagcag agatgtgact gggctgcagt gacgtccctc ctgatgcccc
      601 accctgccac tcactcgaaa ttagacattt acttccagct gctaacatcc ggacaagatt
      661 gcagtcatcg ggatgttgac aactgattgc agatcaacgt cgatgaaact cttgtcgtgg
      721 acaacttaat atcgcaacgt cagttgtggc taactttcca tcctcatgga acagaagtta
      781 tggatgcatt cctggtccac tgggtcaatg ttcctggttc attacctggc tccttcattc
      841 acaaccagga acaaagagtt acagatccca ctgctccatc gaaatgagtt gcactgctgg
      901 accactgctg gaccaccgtc cacagcgtgc agagcttcac tcccaaatag tagttgaata
      961 accaactaat taattagaaa atgaatgaat gaccccttct ttcagacctg cactaatcta
     1021 aatcgacata acgagtcagg cccgctcaac cgcacgattc aactcgagaa ccaaatgcaa
     1081 gctctgaata aagcaatagt cagggctctc tatcatccag caaagtaaac actatccact
     1141 ccgggattga gaaccaagca ctggtgcggc cagccagagt ttcccatcct ccttgtctaa
     1201 tccatcacag atccgcgtat tccgtgcccc tttccttgtt ccatccatca gttggtctct
     1261 ccatttgtct csckssawyt ccttttaatc cttatattca tcaatctcaa gacattcacc
     1321 catccacata tctacacacc tacacatcac acatccgtgc attcatccag ctaagcactg
     1381 tttcatactg actctttgtg aagactcagc tcttcgcctg tgcctg
//