LOCUS JO289234 1116 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c11555_c mRNA sequence. ACCESSION JO289234 VERSION JO289234.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 1116) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1116) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1116 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 321 a 355 c 190 g 249 t ORIGIN 1 ttcagagaac tcaatttctc cactcactgt ttctccccca attgcaatca atcaacatgt 61 aaaaatgtcc caagaatcac aaccacagag tttcaccctc aaacaagtat acacaaaagt 121 tcatcaaacg aagtgggagt cttcttcttc ctcatctcgc cactctacaa ctccactaca 181 gctgtggtgc aatcagcaac caaccttcca gcctacagtt cttcaacaac ctaagggaga 241 taactctcca tcacaatcta cctgaagatc aatggttgct gctgaggagg aggacgacgg 301 ttccaatatt tgatgaagaa aaccaaatag ctgccccaaa agaaaaacaa ctcgtgaaga 361 agcttcctca aagattggat gcgtcgaggg aagccttccc caaatcccaa acccccaaca 421 tacacacaaa gaagatgagc gcccatcagc cctacgccaa gcacttcagc tatggcgtca 481 gcaccacgtt cgcgatggcc tgcatcgttt cccgccaatc gacacccgac cgcgtctcct 541 cgccaacgcg ccaaaacctg ttcgcgaaaa gccgaccagc cgaaaagccc cgactcgatc 601 gcgtgcagcc gttttactcc tgtcacactt cgatccaatc agcgccaacc cggtacccaa 661 ctccgaggct aaaaaaaaac tactaaactc taaaggccct gaaggtactt gggcccaaaa 721 gaacctaagg cccagggact atctaggcct gccttttatt acctgaggtc aggggtttga 781 aacctgcctc ggtcagaact aacctactaa tgtacagccg ctggatgccc aagtccattg 841 cagtgcagca ccggcaatgg tcacgatgtg gctagcttgt aatttcttta ccagagattt 901 ccaggggrcc acactgcaac cggctaatca tcaaagcaac acaaagctcc ctccatctct 961 cattctctca cgcaaagaca ctcttttcct gcatcacaat caaagcagca tctccctctc 1021 tcattctctc acttgatgac gatctttctc tgcaccacaa tcaaagtagc atatccctct 1081 ctctttctct ctctcaaaca atcttttccc ttctcc //