LOCUS       JO289234                1116 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c11555_c mRNA sequence.
ACCESSION   JO289234
VERSION     JO289234.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1116)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          321 a          355 c          190 g          249 t
ORIGIN      
        1 ttcagagaac tcaatttctc cactcactgt ttctccccca attgcaatca atcaacatgt
       61 aaaaatgtcc caagaatcac aaccacagag tttcaccctc aaacaagtat acacaaaagt
      121 tcatcaaacg aagtgggagt cttcttcttc ctcatctcgc cactctacaa ctccactaca
      181 gctgtggtgc aatcagcaac caaccttcca gcctacagtt cttcaacaac ctaagggaga
      241 taactctcca tcacaatcta cctgaagatc aatggttgct gctgaggagg aggacgacgg
      301 ttccaatatt tgatgaagaa aaccaaatag ctgccccaaa agaaaaacaa ctcgtgaaga
      361 agcttcctca aagattggat gcgtcgaggg aagccttccc caaatcccaa acccccaaca
      421 tacacacaaa gaagatgagc gcccatcagc cctacgccaa gcacttcagc tatggcgtca
      481 gcaccacgtt cgcgatggcc tgcatcgttt cccgccaatc gacacccgac cgcgtctcct
      541 cgccaacgcg ccaaaacctg ttcgcgaaaa gccgaccagc cgaaaagccc cgactcgatc
      601 gcgtgcagcc gttttactcc tgtcacactt cgatccaatc agcgccaacc cggtacccaa
      661 ctccgaggct aaaaaaaaac tactaaactc taaaggccct gaaggtactt gggcccaaaa
      721 gaacctaagg cccagggact atctaggcct gccttttatt acctgaggtc aggggtttga
      781 aacctgcctc ggtcagaact aacctactaa tgtacagccg ctggatgccc aagtccattg
      841 cagtgcagca ccggcaatgg tcacgatgtg gctagcttgt aatttcttta ccagagattt
      901 ccaggggrcc acactgcaac cggctaatca tcaaagcaac acaaagctcc ctccatctct
      961 cattctctca cgcaaagaca ctcttttcct gcatcacaat caaagcagca tctccctctc
     1021 tcattctctc acttgatgac gatctttctc tgcaccacaa tcaaagtagc atatccctct
     1081 ctctttctct ctctcaaaca atcttttccc ttctcc
//