LOCUS       JO288887                1223 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c11068_c mRNA sequence.
ACCESSION   JO288887
VERSION     JO288887.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 1223)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1223)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1223
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          391 a          287 c          248 g          297 t
ORIGIN      
        1 caaaagaaac agagttataa cttcctataa gttgattaat aagcataaat ataagactta
       61 ttgaaattcc aaaatggata atattgcata tactggacaa cgatggctat acgtcattac
      121 cactatcact gccatgtttt gctaatcagc aatgctctca gaattagaca ctcatacatg
      181 gttccatgtg tgttgtacgt tggcatcagc cattgctctg cgtacaaaac tcatctccag
      241 attctccact gagatgatca gcatcacatt atgcacacat gccacgtggc atgtactaca
      301 tgctcaactg catgatgaca ctaattaagc cagtgcaaga gtaagacata aacaggagcg
      361 gcaaggatgc tttgcacgct tagctcagtg atagtaatga ccatctgttt gcatttcgat
      421 catgcctgat agatgacatc agctttgccg gaaatcattt tccccatatc aagcatagaa
      481 ccccgacgag tgagagaaag ccaagtggca ttaatgctga cacacatcca tcgcccctct
      541 atttaatctg gtgacctttc gtgattgaat gaactgtccc tacaatggcg tatgggtagc
      601 atgtgcatgg aaaaacttga tccagatgag catgtccagt gtttacccac ccaagcaaac
      661 aagctaacta aggaaaatgg cctgcaacaa gtatattcaa tagattgaaa aaggagaaaa
      721 acgatctttc agataaggag aagagacgaa tgaagaaatg gagcaacgat cagtccagtc
      781 tggttcagtt tacagtcaga ggcttcttag catgtttctc taccacaagg tcaacgagca
      841 gtatgcgtct cttcaatgaa cgttccctgt tcccaccctc ttccattaga cctggttcat
      901 ccagagtaga cctggaaaga accaggtcaa acatctctac gacgctgtgg aacacagtag
      961 acctggaaag aaccaagtct aacgcctgta tgacgctgtg gaacacatta aacctggagc
     1021 gaaccaggtc taatgtctat accacactgt ggagcacatt agacccggaa cgaaccaggt
     1081 ctaatgtcta taccacactg tggagcacat tagacctgga aggaaccatg cctaatatct
     1141 ataccgcact gttgaacaca ttagacccgg accgaaccag gcctaatgtc gctacgacaa
     1201 tgtggaacac attagacccg gaa
//