LOCUS       JO288636                 898 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c10735_c mRNA sequence.
ACCESSION   JO288636
VERSION     JO288636.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 898)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 898)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          257 a          155 c          142 g          342 t
ORIGIN      
        1 attctaatat tgtctttctt ttttgtgatg attgtctttg ttttgagtgg atcatttgcc
       61 acacgatata aattcgatgt aaaaacaatc gaaaaatcct atgaaaaatg atcatacaaa
      121 tcgacgtrra aaaaatacaa aaaaaaaact gctcgtgatc atatacaaac attatccaat
      181 ggtgctattg catctctcta tgctattggt tattgttgga ataccaattg ttcaggtata
      241 tccttaccaa ttgataataa acattcatca tcaatttatt ccattggatt tctctttacg
      301 attgtttgtt gttgtggcga tactttggca tcagaactgg gttctgttct tgctcaaaat
      361 aatccaaggt tgataaccaa tccatatcga acagttcctg ttggcaccaa tggtggaata
      421 tccttggccg gatgtttgtg cagtctgttc ggaggattcc tggttggcct tggttatatc
      481 ataggaaatt tgatcttctg tcgaacagat catctaaatc atacattgct gattaatctt
      541 caattactta tttattgtac attatttgga tttctcggtt ctttgattga ttctttatta
      601 ggtgcaactt tacaattcag tggttatgat cgagaacgaa atgtgaccgt acaaaaacca
      661 aatccatcga ttgaacatat ttccggtcga gatcttttgt ccaataatca agtgaatatc
      721 atttcttcat ttctcacttc gatacttgct atacaaatta ttcccaatct tctcgtttga
      781 tattttattt ttgaaacttt ttatttgtgc tttctttttg tatgcatttt gtttttctta
      841 ttttcgaatt aaacgaaaaa tacgaacgaa cttagtgatg atgaccgtca ccgatcca
//