LOCUS JO288636 898 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c10735_c mRNA sequence. ACCESSION JO288636 VERSION JO288636.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 898) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 898) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..898 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 257 a 155 c 142 g 342 t ORIGIN 1 attctaatat tgtctttctt ttttgtgatg attgtctttg ttttgagtgg atcatttgcc 61 acacgatata aattcgatgt aaaaacaatc gaaaaatcct atgaaaaatg atcatacaaa 121 tcgacgtrra aaaaatacaa aaaaaaaact gctcgtgatc atatacaaac attatccaat 181 ggtgctattg catctctcta tgctattggt tattgttgga ataccaattg ttcaggtata 241 tccttaccaa ttgataataa acattcatca tcaatttatt ccattggatt tctctttacg 301 attgtttgtt gttgtggcga tactttggca tcagaactgg gttctgttct tgctcaaaat 361 aatccaaggt tgataaccaa tccatatcga acagttcctg ttggcaccaa tggtggaata 421 tccttggccg gatgtttgtg cagtctgttc ggaggattcc tggttggcct tggttatatc 481 ataggaaatt tgatcttctg tcgaacagat catctaaatc atacattgct gattaatctt 541 caattactta tttattgtac attatttgga tttctcggtt ctttgattga ttctttatta 601 ggtgcaactt tacaattcag tggttatgat cgagaacgaa atgtgaccgt acaaaaacca 661 aatccatcga ttgaacatat ttccggtcga gatcttttgt ccaataatca agtgaatatc 721 atttcttcat ttctcacttc gatacttgct atacaaatta ttcccaatct tctcgtttga 781 tattttattt ttgaaacttt ttatttgtgc tttctttttg tatgcatttt gtttttctta 841 ttttcgaatt aaacgaaaaa tacgaacgaa cttagtgatg atgaccgtca ccgatcca //