LOCUS JO288401 618 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c10416_c mRNA sequence. ACCESSION JO288401 VERSION JO288401.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 618) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 618) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..618 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 155 a 177 c 145 g 141 t ORIGIN 1 acagcaacac aatctaacgg ccgtcggctg tccgacagtt gtcgcacatt gagtatgaac 61 acgcccacgt tccgtaggtc gatcacacag caacacaatc taacggccga cggctgcccg 121 acagttgttg tcgcacattg acttcaatta ggaagacaac aaagtggtac ctgcctgcca 181 aacatttatt tcttactcgg atttcgtccg ataaagttcc ttttgttgga gaagtagttg 241 aactcggcca gcgtaagctc tcgagaccaa gacactctac ccctgcggtt cgatcctggt 301 ccgcggcatt ggtattcggc gaagaaggtc gtggtggtgg cgctaatgcc tctcatggtt 361 gtccacccct ccggtcggat acaatcattc atatacgtct gaatgaaaat ggttctcgcg 421 tatcgacccc atccacgacc caaccaaccc ctcacgcctg aaccgcaaga caaagtacct 481 ctcaagaaga cgaagccatt aggatcgtta cggccctcac gacgctgagc agtgtacgtg 541 gcggatcgag tattgggtct ttttcgcgta caacgtacag tcttcgaaga acgctgttcc 601 cgcaccgaaa gcgaaatc //