LOCUS       JO288401                 618 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c10416_c mRNA sequence.
ACCESSION   JO288401
VERSION     JO288401.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          155 a          177 c          145 g          141 t
ORIGIN      
        1 acagcaacac aatctaacgg ccgtcggctg tccgacagtt gtcgcacatt gagtatgaac
       61 acgcccacgt tccgtaggtc gatcacacag caacacaatc taacggccga cggctgcccg
      121 acagttgttg tcgcacattg acttcaatta ggaagacaac aaagtggtac ctgcctgcca
      181 aacatttatt tcttactcgg atttcgtccg ataaagttcc ttttgttgga gaagtagttg
      241 aactcggcca gcgtaagctc tcgagaccaa gacactctac ccctgcggtt cgatcctggt
      301 ccgcggcatt ggtattcggc gaagaaggtc gtggtggtgg cgctaatgcc tctcatggtt
      361 gtccacccct ccggtcggat acaatcattc atatacgtct gaatgaaaat ggttctcgcg
      421 tatcgacccc atccacgacc caaccaaccc ctcacgcctg aaccgcaaga caaagtacct
      481 ctcaagaaga cgaagccatt aggatcgtta cggccctcac gacgctgagc agtgtacgtg
      541 gcggatcgag tattgggtct ttttcgcgta caacgtacag tcttcgaaga acgctgttcc
      601 cgcaccgaaa gcgaaatc
//