LOCUS       JO288272                 716 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Nitella hyalina strain KGK0190 nhya_c10228_c mRNA sequence.
ACCESSION   JO288272
VERSION     JO288272.1
DBLINK      BioProject: PRJNA51163
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Nitella hyalina
  ORGANISM  Nitella hyalina
            Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
            Characeae; Nitella.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Nitella hyalina"
                     /mol_type="mRNA"
                     /strain="KGK0190"
                     /db_xref="taxon:181804"
BASE COUNT          215 a          156 c           95 g          249 t
ORIGIN      
        1 ttagccatcg atcgttctaa accttcatca agtwaatctc gcagacgtaa ttgtttcacc
       61 tgattcgtac tttttaattt tttttcccta tcttcaccaa gtacaacacc gaaaccaaca
      121 tgatcaattc gtgtatttcc tcgttccaac catcctgcta cttttgcacc cgcaaagatc
      181 gattgcatat gaagcgcctg tcctaaatca atgacataaa taatccaatc cgctttttct
      241 tcattcaatc gttgtttaat agtggccata tcacttgtat cataagtaaa acttccatcg
      301 gttttaacaa tggtcatcgg tacttcaata cccggtacaa acatcacttg acgaccttct
      361 tctaatttca agagattttt tgattgtaat tctttcacaa tatcgagcat tcgactttga
      421 taaaatgatt cacctcgatc gactatttta atatcaagtt ctttgtaaat atattcgaaa
      481 tctcttcgag aaacatcgca aatcattttc catgcatgag ttatatccgg atcaaatgct
      541 tgaagtttaa caacacattc ataggctcgt tgtttaaaat ctgcttctgc atcaaatcgt
      601 ttttcgattc tttataaaat gataaaagat cactaatcgg tggtgatttg tttatattcc
      661 ggatagatat cttgtaaatg agcaataagc ataccaaatt gtgtacccca atcacc
//