LOCUS JO288272 716 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Nitella hyalina strain KGK0190 nhya_c10228_c mRNA sequence. ACCESSION JO288272 VERSION JO288272.1 DBLINK BioProject: PRJNA51163 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Nitella hyalina ORGANISM Nitella hyalina Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales; Characeae; Nitella. REFERENCE 1 (bases 1 to 716) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 716) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..716 /organism="Nitella hyalina" /mol_type="mRNA" /strain="KGK0190" /db_xref="taxon:181804" BASE COUNT 215 a 156 c 95 g 249 t ORIGIN 1 ttagccatcg atcgttctaa accttcatca agtwaatctc gcagacgtaa ttgtttcacc 61 tgattcgtac tttttaattt tttttcccta tcttcaccaa gtacaacacc gaaaccaaca 121 tgatcaattc gtgtatttcc tcgttccaac catcctgcta cttttgcacc cgcaaagatc 181 gattgcatat gaagcgcctg tcctaaatca atgacataaa taatccaatc cgctttttct 241 tcattcaatc gttgtttaat agtggccata tcacttgtat cataagtaaa acttccatcg 301 gttttaacaa tggtcatcgg tacttcaata cccggtacaa acatcacttg acgaccttct 361 tctaatttca agagattttt tgattgtaat tctttcacaa tatcgagcat tcgactttga 421 taaaatgatt cacctcgatc gactatttta atatcaagtt ctttgtaaat atattcgaaa 481 tctcttcgag aaacatcgca aatcattttc catgcatgag ttatatccgg atcaaatgct 541 tgaagtttaa caacacattc ataggctcgt tgtttaaaat ctgcttctgc atcaaatcgt 601 ttttcgattc tttataaaat gataaaagat cactaatcgg tggtgatttg tttatattcc 661 ggatagatat cttgtaaatg agcaataagc ataccaaatt gtgtacccca atcacc //