LOCUS JO244545 850 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Coleochaete sp. CFD corb_UMD_Coleochaete_c20141_c_s mRNA sequence. ACCESSION JO244545 VERSION JO244545.1 DBLINK BioProject: PRJNA51149 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Coleochaete sp. CFD ORGANISM Coleochaete sp. CFD Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae; Coleochaetales; Coleochaetaceae; Coleochaete. REFERENCE 1 (bases 1 to 850) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 850) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..850 /organism="Coleochaete sp. CFD" /mol_type="mRNA" /strain="CFD" /db_xref="taxon:1068959" BASE COUNT 194 a 221 c 243 g 183 t ORIGIN 1 tttgggcgct ggggcaagga ggtgatatcc cgacgatgtt gggggtcatt cgccacaggt 61 ggaagcgkma kkmccrrsac ggatgtccgc agctcaactt gctgacgtac aacactgccc 121 tccacgcctg ccgtcgccat ggaaagtttg ctgagatgca cgagctcatt gagatggcgg 181 gaagagatcc caacctcacc aaagtcccac ccaaaggacg tctcggggac cagtttgcat 241 acggcgacga cgatctgacc ggagctctgc gagttctcaa cgctctgcgt cggagcggaa 301 agtctcccga cctcctcaca ttcaactttc tcatccaggt ggtgagtcat gcaggccatc 361 tgggtgatgc ggtgagcctt ctcgcgagga tgcaggctga gggaatgcga tcggacagcc 421 aaaccctcac aacgctcctt tctatgcagc gcaccatgga cgctttgatg tgctggagta 481 cgctgtccaa cgcatgctcc gagagggctt ctctctggac ttcaaaatct gtacagccgt 541 gatttcgcct tacgtcaagt ggggaacgcg taaagatgtc gtgcgagtgt tgaaagtgat 601 gcggagtgga ctgctttccc caaaggcatc cacttcaaga gatgatggac cacggctggc 661 ataggacgag aggcatccga ggacgacaag ggtagcctac gtcaggagca tcgaggggtt 721 ntcgcaaact gttggagaga gagtacgcac gcagagtaag gagcatctat atctatcttt 781 tgcgtcagcg tttgatcttt tccaccaggg aggaacactc tctacggcgt gcttctatgt 841 ataacatata //