LOCUS JO240128 1208 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Coleochaete sp. CFD corb_UMD_Coleochaete_c13935_c_s mRNA sequence. ACCESSION JO240128 VERSION JO240128.1 DBLINK BioProject: PRJNA51149 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Coleochaete sp. CFD ORGANISM Coleochaete sp. CFD Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae; Coleochaetales; Coleochaetaceae; Coleochaete. REFERENCE 1 (bases 1 to 1208) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1208) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1208 /organism="Coleochaete sp. CFD" /mol_type="mRNA" /strain="CFD" /db_xref="taxon:1068959" BASE COUNT 282 a 300 c 366 g 258 t ORIGIN 1 tgcagttgaa aagtactctc acgataacat ctcctgtagc accttctctc gcagcactaa 61 ggagtaaact ggcsgcagga ggtccgacac tcatggattt tgcgagctcc ggaaagtcac 121 cttggctatg ctgtggaagc ggtgcaacca aaagagaaga agctgaagcc agattggatg 181 aaacgcatca ttcctggcgg tgagaaatac acacagatta agagtaagct acgggggttg 241 ggactgcaca cagtttgtga ggaggcaaag tgtccaaaca tcggggagtg ctggagtggg 301 ggggagactg gaactgccac ggcaaccatc atgattctgg gggacacatg cactcgcgga 361 tgccgattct gtgccgtgaa gacgtcaagg gcgccgccgc ctcctgacgc ggacgagccg 421 aggaaggttg cagatgcagt ggccgcatgg ggactggact acgtggttct tacgagtgtt 481 gatagggatg acctccctga tcagggtagc aaccactttg cagaaacggt gcgggggctc 541 aaaagagcgg aagcctggca tgcttgtcga ggctcttgtt ccggattttc ggggaggatc 601 cagaatgcgt cacacgcgtt gcgacgtccg gtctggacgt ctttgcgcac aacgttgaga 661 cagtggagga gctgcaggca gtggtccgtg accggcgtgc caattttgcg cagtcgttgg 721 gggtgctgcg tctagccaag gagatcgcgc cacctggcac gctcacaaag acctccatca 781 tgctcggctg cggcgagacc ccggaccagg tgcttcgtac gatggagaaa gtgcgcgccg 841 ctgatgtgga tgtcgtcaca tttggacaat acatgcgtcc gacaaagaga cacatgcctg 901 tctctgaata cgtcaccccc gagggctttg accactggcg cattgttggg gagcagatgg 961 gcttccgcta cgttgcctcg gggcccatgg tgcggtcctc atacaaggcg ggagagttct 1021 acatcaagtc catgattgag cgtgatcgcc aagcaaacga aactaacagc cgcaaaagac 1081 ctcagtatga atgagaaccg caataagtgt ctcttgtgta ttccgtgttg ccgatttaag 1141 ttgaagcatg aatgctagcc ttctatggct cccatgggtg attttaaaat wctcactctc 1201 tctctctc //