LOCUS JO239979 650 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Coleochaete sp. CFD corb_UMD_Coleochaete_c13710_c_s mRNA sequence. ACCESSION JO239979 VERSION JO239979.1 DBLINK BioProject: PRJNA51149 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Coleochaete sp. CFD ORGANISM Coleochaete sp. CFD Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae; Coleochaetales; Coleochaetaceae; Coleochaete. REFERENCE 1 (bases 1 to 650) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 650) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..650 /organism="Coleochaete sp. CFD" /mol_type="mRNA" /strain="CFD" /db_xref="taxon:1068959" BASE COUNT 172 a 122 c 143 g 210 t ORIGIN 1 gtgacatgga cactcctacc ccccatgtgg catgaccatc catcgacaac aatgtgtgac 61 taaccgtaac ctaaggtaag gcgttagggt ttaggggtta gggtaaccca aataagggcc 121 gattacacaa ttggttccaa ttcgtagtct tttctcgctc ttctttttgt ctctctagtt 181 ttccttgtgc gttgctttca gtaagtggat gtagcacgct cttctacaaa tctctatgaa 241 ggttggttca gcgacattca aggtgtcgtt gccaagctct tctatcaagg aggaggtctt 301 atgaggaaat aagagttggg aatcttttgt ttcatgacca cgtttggttc ttgcacttct 361 tagaatcatt tttagggtca tgtgtgttct taatattgca agctacaact cttttttccc 421 ggtaggaagt tgatgtgcag ttttgttgcc ggtgtaagga ctatgacatg ggcaccatac 481 gtcaatagaa tttatgcctt tgcttgttgc acmammaagt gaacgatgat cacgaattta 541 cttactaagg tacttactaa tttacttact aaggttaaag cccaaaaaca agcttcaata 601 gtgatagtca tacaagtgaa aaaaggttga tgagtatgca aggatgatat //