LOCUS JO239556 540 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Coleochaete sp. CFD corb_UMD_Coleochaete_c13050_c_s mRNA sequence. ACCESSION JO239556 VERSION JO239556.1 DBLINK BioProject: PRJNA51149 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Coleochaete sp. CFD ORGANISM Coleochaete sp. CFD Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae; Coleochaetales; Coleochaetaceae; Coleochaete. REFERENCE 1 (bases 1 to 540) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 540) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..540 /organism="Coleochaete sp. CFD" /mol_type="mRNA" /strain="CFD" /db_xref="taxon:1068959" BASE COUNT 120 a 110 c 188 g 122 t ORIGIN 1 tgtgatggca gagtcgggat ttagagtgca ctctgagtgt agaggattta tgccactcag 61 ggagggggag acgcagggga ggattgtgaa cttggtggga gttatttctg gggagggaac 121 gagagttctg ggggatgtgg tggtggcaga tccggagcgt cagacttgcc acagagcagc 181 agtaacagag ggacacgcag cagcaatggc cgaggccgtc aagatgacga aatacggcga 241 ccacttccct gccgacagct tctactcgct agctctcgag acatacggtt gattcgggag 301 atccttgagc gcattgttgt ctaggtgctc agagcgggct ttctatgctt cggtagggac 361 atctgtagta gatggagtgg gctcacagtc agtgggcact tgggcatcag gagcattgag 421 atggttgtcc tactttagag ggcgggttag cattgccttg cagagatcgc aggctgtagc 481 tcttcatgat agagctgcta ggatcactga gggagacagg caggccagct cgcactctag //