LOCUS JO239072 1512 bp mRNA linear TSA 11-JAN-2012
DEFINITION TSA: Coleochaete sp. CFD corb_UMD_Coleochaete_c12295_c_s mRNA
sequence.
ACCESSION JO239072
VERSION JO239072.1
DBLINK BioProject: PRJNA51149
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Coleochaete sp. CFD
ORGANISM Coleochaete sp. CFD
Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae;
Coleochaetales; Coleochaetaceae; Coleochaete.
REFERENCE 1 (bases 1 to 1512)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), E29696 (2012)
PUBMED 22253761
REFERENCE 2 (bases 1 to 1512)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Direct Submission
JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
University of Maryland, Bioscience Research Building, College Park,
MD 20947, USA
COMMENT Two-step clustering process: First, trimmed 454 reads were
clustered with MIRA v.2.9.43 using 454 EST assembly specific
parameters. Second, the raw Sanger reads were combined with the 454
contigs + singleons (with quality scores) and were cleaned then
clustered with CAP3 (100 bp plus 95 percent identity overlap).
##Assembly-Data-START##
Assembly Method :: MIRA v. 2.9.43; CAP3
Sequencing Technology :: 454 GS FLX Titanium; Sanger
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1512
/organism="Coleochaete sp. CFD"
/mol_type="mRNA"
/strain="CFD"
/db_xref="taxon:1068959"
BASE COUNT 350 a 349 c 456 g 355 t
ORIGIN
1 cgggatgcta actttgtcat tgaacacagc actgtccaga ggccgttact ttgcgagggg
61 ggcggttaat gcacagaatg taactcgctt gtctgggttc ctaacttgtc cggaatycct
121 crggaaagcc gtctcgcttg acattacatc aaaggagagc tacgactgct cttggacgaa
181 atttggggcg cgggccactt gtgacaggtg tggctcgcat ggtggccacg tcagcagaac
241 agaatgaggg ggcagcgggg attgaatctg cgggaggtgg aggcaagctg gaagtgtttg
301 aaaaggacat tcttattgtc ggtcccgggg ttcttggcag catggtcgcc acagaatgga
361 ttaaggactt tcctgagacc aaggttgtgg ggcaaacaaa cacgacaaac tcgcacgaga
421 ggctgcgctc cctgggcgtg ttccccattg tgaaggatct agaaacagcg gaacaggaca
481 agtacccatt cgtcatcttc tgtgcgccac catcgggcag ctccgattat gcggccgaag
541 ttagggcagc tgctcagagg tggaacggag tgggctcgct gcttttcacc tccagcagcg
601 cactttatga cgtcaatgat gggggatggt gtgacgagag tgctcatgtg gtgcccaaag
661 ggggaagagc cctcgcacag atgtgctact caatgcggag gaggaggctc tcaaggctgg
721 aggaaatgtc gtccgattcg ccggccttta caccctggac cgcggcgccc acacgttctg
781 gcttgcaaag ggcacggtgc catctactcc tgactactac ctcaacttaa tccactacga
841 ggatgcagct acattggcca aggccattct ccttgcacga acccgaggcc agattttcat
901 ggggtgcgac aaccacccag tcacaaggaa ggaagtgatg gacgccactc ttaagagcgg
961 caagttcaag ggcacattcg acggcttcac aggtactgag ggtgacatgg gtaaacggat
1021 gtgcaatgac gccacgcgtg ctgcggttgg ctggcatccc aagtattcat gtttcccccg
1081 ctttctgggt gtggaatgat gtgggaggat gaatctcaca atttctcatc ctctgcattt
1141 ttggtgcttt cttaagatga attgaagagt tggttgtgta gaagctgggg atgagcgaac
1201 agctgcggag taaatgtatg ttggaagatc tgttatggtt gccacagttt tgttgtctcg
1261 aattgcatgg cggtaggtgg aagtgactct caccttcgaa attgaattgc tctttccctc
1321 atgagcgcac tcgtgaagca tagcgcgtgt ccgctcacgc tcgctgaaga gagagagaga
1381 gagagagaga gagagagaga ggaagagaga gagtgtgctc agatagaact acttctcgtc
1441 cgttacatct cccacacttg tggttcagtt cgaacgttgt gttgtttgtt gtcgttaggg
1501 atcgcaacgt ac
//