LOCUS JO238899 708 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Coleochaete sp. CFD corb_UMD_Coleochaete_c12023_c_s mRNA sequence. ACCESSION JO238899 VERSION JO238899.1 DBLINK BioProject: PRJNA51149 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Coleochaete sp. CFD ORGANISM Coleochaete sp. CFD Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae; Coleochaetales; Coleochaetaceae; Coleochaete. REFERENCE 1 (bases 1 to 708) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 708) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..708 /organism="Coleochaete sp. CFD" /mol_type="mRNA" /strain="CFD" /db_xref="taxon:1068959" BASE COUNT 163 a 140 c 192 g 207 t ORIGIN 1 aacatgcaat gccatttgga acaagggata tgggactgca ttgcctcaga acatttgtgc 61 tcttgttctt ctccaggagg tgagaacccg aaccttgcgg accttgccgt ttatggcgtt 121 ctccaatcca tcmksaatky mcgggttccc gggatcacga gctgttggag aagagcaaga 181 tcaggccatg gtatgagcgc atgaaggtgg ctgtggggga gccttgcagg atcgcagatg 241 catgatcgta catgacttag tctcccagag catatccgtt aaactctttt ttcaacctcg 301 cttctgccaa tctgcactca aaaaagtgtt cttgacagag aggtatgcaa tagaggcaat 361 gctctcttac gcatgttaat aacgccagtg gatacttttt gaagttttta gccacggcgc 421 aagttttgtg caatgtcagt cttgctagct tctagggaat tttattagtt tcattttttg 481 gggagggggg aattgagaat aagtggcgag gtgtctgttt ggactccaag tcgttggaca 541 ggacgcattt aggagtggtc cagtggtgca ggagggtcat ggagtacatg tgctttgatg 601 tttgttgcac atagcagagc tgggaggagg gaacacgcag gttgttgttt tgtcagaaca 661 taatacactc ttcttagttt atttcagtgc gaggtctctc tctctctc //