LOCUS JO238682 574 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Coleochaete sp. CFD corb_UMD_Coleochaete_c11665_c_s mRNA sequence. ACCESSION JO238682 VERSION JO238682.1 DBLINK BioProject: PRJNA51149 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Coleochaete sp. CFD ORGANISM Coleochaete sp. CFD Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae; Coleochaetales; Coleochaetaceae; Coleochaete. REFERENCE 1 (bases 1 to 574) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 574) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..574 /organism="Coleochaete sp. CFD" /mol_type="mRNA" /strain="CFD" /db_xref="taxon:1068959" BASE COUNT 103 a 179 c 94 g 198 t ORIGIN 1 ctctctctct ctctctctct ctctctctct ctctctctct ctctctctct ctctctctct 61 ctctctctct ctctctctct ctctctctct ctctctctct ctctctctct ctcgcgcgcg 121 cgcgcgcgcg cgctctctct ctccatcgag gccatcaaag tgttttgagg atgctgcctt 181 gtgccatagt acatctctgt ctctctcgca ttcgttcatt gacgcaggga atgcatgcat 241 gcatgcagtt ttatgatttc ttccacttcc cgcaatcttg agtccttcca tgttcaggtt 301 ttccttccgg gtgtaattga ctagcatgca tgtatgaagg aactatgtat ctctaccatg 361 catgtgttgg agaaaaagaa agatttgtcc ttgagcatac cctcttgaga tattcattta 421 cacatgtttt gcacattaat gctctcatcg caatttcata tatcacgatg tagtacccgt 481 atagtcaaca tccattggac acgcacaact cgcactcctc acacatgtgt gtgtgtgtaa 541 gggatgctac catgagcaca ccctcctccc ttgc //