LOCUS JO238536 865 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Coleochaete sp. CFD corb_UMD_Coleochaete_c11408_c_s mRNA sequence. ACCESSION JO238536 VERSION JO238536.1 DBLINK BioProject: PRJNA51149 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Coleochaete sp. CFD ORGANISM Coleochaete sp. CFD Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae; Coleochaetales; Coleochaetaceae; Coleochaete. REFERENCE 1 (bases 1 to 865) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 865) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..865 /organism="Coleochaete sp. CFD" /mol_type="mRNA" /strain="CFD" /db_xref="taxon:1068959" BASE COUNT 232 a 248 c 175 g 210 t ORIGIN 1 gcatagtcct cttgacactt agagattgct gcccggtttt ccatccagac ttattactta 61 gcacacctgc tttccactat aaactcagtg actatgacta cacggatatg acagacgctt 121 ctcaagcaag tagtctcacc acacggtcat cataacatgc cactcgtagc atcatcaaag 181 tcaacagagt tttagtgcga caactgtgta ttctagggtt ccaaaccccc gtcaacacat 241 tgtgaggcct tggttttcag agaacggtct ttctggttcg acatttccat gcagcaatgg 301 gggacatggt atcaaaaccc taattctgaa aaccctaatt tcgtaaaaaa cacttttcga 361 tgccgaatcg ggacgaagaa agaactatgc acgatttgca ccgtacttcc accgtagggc 421 cgagaaagca aattgcagga ttagacaaag gattagggtt tttgaaagta gctacgccgg 481 actgacgtct tctcctatac aagacccact tattatccct tgcgatcggt tgttgaactc 541 caaaaactcg ggaaaaccca tccaacaccg acaaaaaaat accaagcaca aaagtcgggc 601 gtagtctttc ggggagcttc gagcctgcgc cacgtcagca gtcctcaaac ttccgccttg 661 cataacacag ccttggggtc gtccccgtca aacagtaaat tgctttgcct tttattgtac 721 actccacact agccgcggcg ccgttccaac gtcccctctg cactactgta cacttctttg 781 cccaccgccg ccccgcagcc actcgagaac aggcctcagt gtggattccc tgggcaagta 841 gcccatagac ctcacgctcg tctga //