LOCUS JO238132 766 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Coleochaete sp. CFD corb_UMD_Coleochaete_c10735_c_s mRNA sequence. ACCESSION JO238132 VERSION JO238132.1 DBLINK BioProject: PRJNA51149 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Coleochaete sp. CFD ORGANISM Coleochaete sp. CFD Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae; Coleochaetales; Coleochaetaceae; Coleochaete. REFERENCE 1 (bases 1 to 766) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 766) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..766 /organism="Coleochaete sp. CFD" /mol_type="mRNA" /strain="CFD" /db_xref="taxon:1068959" BASE COUNT 243 a 204 c 151 g 156 t ORIGIN 1 aggaacatcc catgcaccag tgaaatctct atacagcatg gaaacctacc aactcctgcc 61 agtggacatt tcagataccg tgagtgccga atgcatgcat ggacgtacaa cacacacgca 121 tacccacgcg caccagcccg gaacaactat actgccaaga ccattccaca gaaaacgtat 181 ctgaagccag agaagaaaga gggagaaatg agcagcttct acacaaccga ttccagcaac 241 aaatactact gcctacgtac atcatatcac tccatggacg ttatcataca acttagtgga 301 gagaagtgtt tgcatcgtga gacacttacg aagtccgtct catccaacta cacaagtcat 361 tgcggggaac aggagtcaca gatgatggca caaactgcac aagttcccgt ttaaggccct 421 gagcacagtc gccagcaaag cagcatcgaa tcatggtaac atctaagctc gttgtgaaaa 481 tgaaaaggta cattgtattc agaaaaaatg aaaatgaaaa gggccaaata gataatccac 541 agctactctg ggagagtccg catcgccgta caaagccaac agccacctcg atgagaggct 601 aaaggcacaa ggatttcttc cttctactgc ttttcacacc actcggagaa caaaaccacc 661 accaccannn ccngcacctt accatgccgc cctcttnatc ncnnnnnntc tcgtctctgg 721 tcgttttgat gacctaatgt cttgtgatgt tgaatgaaag gacctt //