LOCUS JO232910 694 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c70140_c mRNA sequence. ACCESSION JO232910 VERSION JO232910.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 694) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 694) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..694 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 161 a 159 c 222 g 148 t ORIGIN 1 aattccccgc rgakggcaca gtggagtgyc yagtggtgca gcggcagcgg ctactttgtg 61 cttggcgaca aactgctgtg tgaggtgccg tcgaggaaca cacagtgcct cgtgtgccat 121 ggccagggca cggtgcggtg caacgagtgc atgggcacgg gtttccgagc gaggtggctt 181 gagcctttgc gggagcaaag gcacaagaca tgagggaggg tgccctgtat agagcttctc 241 aggattccac cgcgccctga atccacccga cgaacaacac gagggctgat gtcgttgtgg 301 gtgctactga gacactgtca ggaccaaaca acagacaggc atggggaaag ttggtgccgc 361 acctcggtcc gtgccaagcg gcatgcgcac tccaagacca acacagttct aatgtggtag 421 tgtgggcgtg gggtgtggaa cccttccccg aggtgaccca agtgggtctc ttgcaaagca 481 atgcgctaat tttgctcgct ccttgtccgt tgggtccctt gtaaatcagg tgatgttttg 541 tgaatagtcc atgaaatgac ggatgttgtg gacaagcagg aggaagcaag aagatacctt 601 agataggttt ctttgcaggg accgataaca aacttaggct gggagagctg aaactgagtg 661 gttatgtagt gaaactagca ggatgcttca atgc //