LOCUS       JO232910                 694 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c70140_c mRNA sequence.
ACCESSION   JO232910
VERSION     JO232910.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          161 a          159 c          222 g          148 t
ORIGIN      
        1 aattccccgc rgakggcaca gtggagtgyc yagtggtgca gcggcagcgg ctactttgtg
       61 cttggcgaca aactgctgtg tgaggtgccg tcgaggaaca cacagtgcct cgtgtgccat
      121 ggccagggca cggtgcggtg caacgagtgc atgggcacgg gtttccgagc gaggtggctt
      181 gagcctttgc gggagcaaag gcacaagaca tgagggaggg tgccctgtat agagcttctc
      241 aggattccac cgcgccctga atccacccga cgaacaacac gagggctgat gtcgttgtgg
      301 gtgctactga gacactgtca ggaccaaaca acagacaggc atggggaaag ttggtgccgc
      361 acctcggtcc gtgccaagcg gcatgcgcac tccaagacca acacagttct aatgtggtag
      421 tgtgggcgtg gggtgtggaa cccttccccg aggtgaccca agtgggtctc ttgcaaagca
      481 atgcgctaat tttgctcgct ccttgtccgt tgggtccctt gtaaatcagg tgatgttttg
      541 tgaatagtcc atgaaatgac ggatgttgtg gacaagcagg aggaagcaag aagatacctt
      601 agataggttt ctttgcaggg accgataaca aacttaggct gggagagctg aaactgagtg
      661 gttatgtagt gaaactagca ggatgcttca atgc
//