LOCUS       JO232447                 449 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c58799_c mRNA sequence.
ACCESSION   JO232447
VERSION     JO232447.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT           94 a          141 c          135 g           79 t
ORIGIN      
        1 cttgctattt gcacttcgtc gcgggtcacg ttgcgcgaca ggaggcacca ccagcaccag
       61 cagacaacac tccgcagcag cgccagcgac cgcagcagta gcggcagttg caacaccagc
      121 agccgcacct ggaacagcag cagcagcagc catgcacgac ttctgtttca cgctgcctta
      181 cggagtgctc ctcgcgctgg gcggcgtggt cggatttctg cgcaagggca gcgttgcgtc
      241 gctggccggc ggcgtgggca gcggcctgct gctgtacctg gcgggccagt tgcagctcaa
      301 ggccttcgag aaacggaaga actctcttcc ggcgctgctg cttcaacttg aggtgtgagc
      361 gcgtgtgagc gtggtaatga cggtattcta cgtcgtcaaa atcgcaacag gaggcaacca
      421 cttcaaacca aaaccaacct gaccagcac
//