LOCUS       JO232431                 680 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c58376_c mRNA sequence.
ACCESSION   JO232431
VERSION     JO232431.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          144 a          176 c          184 g          176 t
ORIGIN      
        1 acgtcatgga tgtggatgct cactacggcg ggtttggcgc ggcccttgca gacaagccaa
       61 tgtggagcat gaatgtggtt cctaccacca gccccgacac actgcccatt gtctttgacc
      121 gtgggctgct gggcatctac cacgactggt gcgagtcgtt caacacgtac ccccgcacct
      181 acgacctcct gcatgtcgat cacttcctcg gccacgctgc taagagcaag aggtgcgacg
      241 tggcagacat catgctggaa tttgaccgca tcctccgccc tactggctat gtcatcatcc
      301 gtgagcatgc tgatcgtgct cctgttgtgg aaggcattgc caagggcctg cactgggacc
      361 tgaaaaagcg cttccaggag gagaatgagg ttctcctttc ctatcagaag accctctggc
      421 ggccacagta ggggcctagg gagttacttt tccaggtagg gtaggtggtc agtgctttcc
      481 cctccaatcc cacatgtgct gtgggtatga gctttcgata tttccttatt atatcataag
      541 gcaggactca gccctaaaat tctttcccac ttctcttgaa ctgaagatgt ggatttggat
      601 gtgggatgtt gtgtgctgtg ctgagagggg tcaaaactga cttttgacct gttcatatta
      661 gtgagggaaa gagcttaata
//