LOCUS JO232424 491 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c58170_c mRNA sequence. ACCESSION JO232424 VERSION JO232424.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 491) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 491) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..491 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 119 a 122 c 150 g 94 t ORIGIN 1 gtgggtgtag cagcwkcmcg cgsaggcaaa gatggtgaag ttttcttgaa gccgaacaag 61 gtggtgctgc tgcttcaggg ccggtatgcc ggccggaagg cagtgatcgt gaagaatttc 121 gacgacggcg tgtccggcag gcaatatggc catgcgctcg tggccggcat cgccaagtac 181 ccccgcaagg tgtcgaagaa gctgccgcct aagactctgg caaagcggtg caggctcaag 241 tcgttcataa agctcgtcaa ctacaaccac attatgccca ctcggtacca gctggatgtc 301 gacctgaaga acactgtgac tgtggacaag cttgagacca gcaccaagcg caaggagacc 361 cgcaaggaag tgaagaagat tttggaggga garggttcsa agacgtggac aaagaacgag 421 gtggttcttc tccaagttgc ggttctagat gctgcctggc atcaaggctc ctgactcgct 481 ggctacacct t //