LOCUS       JO232349                 669 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c56922_c mRNA sequence.
ACCESSION   JO232349
VERSION     JO232349.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          175 a          179 c          164 g          151 t
ORIGIN      
        1 aattgagtcc aatagaaatg aagcatggtg caactacaac aaatgaacac tgaacgagcc
       61 aaagcatgct aaagagcctc attgtcatga gctatacata agaaaagctc tctacaaagt
      121 agacgaattc atttaagtga ctccactctt atggacactt cggattgacc gaccagaggc
      181 atttagcggg cctaggtgct atctaatatg agtgctagtg cctgtgcatt gtccgaagga
      241 atcattgttg gaatcgcatt catgatgacg tacccacatt catcgtgatt gagacgtatg
      301 ggtgcacctc tgcatcccca ccagtgaggc ctatgagtgc cgcatcacct tctgaccctt
      361 tccagaagtc actctggtca tggctgccca gggagtccaa cgccgtgcgc aaccgcttct
      421 catttcgaga agatggtgag atgatggttg caaggaacgc tggaggcaag ccgtagcgca
      481 gaatactttc ggtgaacaga cggatcactg atagatgcat ccaggcagca aacacctccc
      541 catagccaac gtgacaccac tggatgagcg aatcgcgcat ggcctcctga tccgccgcta
      601 gtcgctgctg ctcctcctgc cgctgctgcg cgccctgagg ggtcatggtc atactctctg
      661 acctgaaac
//