LOCUS JO232349 669 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c56922_c mRNA sequence. ACCESSION JO232349 VERSION JO232349.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 669) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 669) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..669 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 175 a 179 c 164 g 151 t ORIGIN 1 aattgagtcc aatagaaatg aagcatggtg caactacaac aaatgaacac tgaacgagcc 61 aaagcatgct aaagagcctc attgtcatga gctatacata agaaaagctc tctacaaagt 121 agacgaattc atttaagtga ctccactctt atggacactt cggattgacc gaccagaggc 181 atttagcggg cctaggtgct atctaatatg agtgctagtg cctgtgcatt gtccgaagga 241 atcattgttg gaatcgcatt catgatgacg tacccacatt catcgtgatt gagacgtatg 301 ggtgcacctc tgcatcccca ccagtgaggc ctatgagtgc cgcatcacct tctgaccctt 361 tccagaagtc actctggtca tggctgccca gggagtccaa cgccgtgcgc aaccgcttct 421 catttcgaga agatggtgag atgatggttg caaggaacgc tggaggcaag ccgtagcgca 481 gaatactttc ggtgaacaga cggatcactg atagatgcat ccaggcagca aacacctccc 541 catagccaac gtgacaccac tggatgagcg aatcgcgcat ggcctcctga tccgccgcta 601 gtcgctgctg ctcctcctgc cgctgctgcg cgccctgagg ggtcatggtc atactctctg 661 acctgaaac //