LOCUS JO231690 713 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c48590_c mRNA sequence. ACCESSION JO231690 VERSION JO231690.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 713) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 713) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..713 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 204 a 169 c 191 g 148 t ORIGIN 1 cagcagcagc agccggagca gaagcagcag tagcaggagc agcggccaca gcaacagtac 61 ggaaggagtg gttgcaaggc tcaagttcta tgtttgcagg accattgccg aacaagcaca 121 tggtcaagca gctcaagcca gcaagccagc gaaraagtac aagcaggcaa gccgactgaa 181 cattgaagca gccttgactc tgtctgggat gcagcaaacg ggcaacaaaa taaggcaaaa 241 gcaaggagca caactttcct ggacgtggtg ttgcgccagc caggctatga gtacgtcacc 301 attcgttgac tgagtcgtcg tagtgcaaac gatcacacct tgtgctcaaa agggcacagc 361 tcactgccaa caatgaaagc ttcgttcaaa atggtgtcgt gtgaagtaaa ggtggagaac 421 ggcctctcct ccgtgactct ggtccggagt agttcaaggt tatgcctctc gacaaggatg 481 ggtgctcgct agatttgatc aggcattcaa cggacaatct gaagatgact gtgtcacaag 541 catttgggtg acatgcgaga tagtgtggta gtagtcgaac aaggcgatgc aaagtgcgaa 601 tggtgtacat cttgtacaca agaagctagc gcaaggagag agcaatggcc ttttgcctca 661 ccctctaatg ctatgatatc accttacatt gcctaatcca atttccttcc ttc //