LOCUS       JO231079                 909 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c44134_c mRNA sequence.
ACCESSION   JO231079
VERSION     JO231079.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 909)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 909)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          194 a          222 c          278 g          215 t
ORIGIN      
        1 aacaagtgac ctttctcgcg cagatactgg agggggtggc tcgctcgttc cagggggggg
       61 agattgtgtg gccgcctacg gacccgcaag ttctcgtcga cctcaaacag gatgtggagg
      121 cacgtgacgg ggaaggccag ctggatgaca cattccttgc aactgtctcc gcacagctgc
      181 gccaggcggt ggagagaggc gacaggccgg ggctggtggc aatgctgcag aaggtgctgc
      241 agctcgtcgc cgcacaccga ttcggcaaga gctcgtacgc agtgaaggcc gatggctctg
      301 tggatgaggc ggagaagctt ctagaagacg tgctcgcagc gcccgaggag gagtgggacg
      361 cactcctgcg ctcgggcctc gcgcttggag gcggcgctgt gcctacagac gacttctttg
      421 ccgccctcaa caaacgatcg cagcgcatgt tcatgaggac ggagagtggg tcttacgagc
      481 aacgcatcct tggcgagtat ttgaaggagg tggagcttcg agctacagcc accgtggagg
      541 ccttcaagtc tgcagcgaca tagtgactca tcggcctacg cgagcacttc gccctgccgt
      601 gaaagcgtgg cattgttctt tttaagcacc tttgcccctt tgagaaactc tccacggctc
      661 atgggcccct acaattgagt tgagttatga tttgttacat catccaaggt gtgcaagcca
      721 aagagtaatg aagcttttgc tatagaatgt tttctagtcc ttttaagcat gcttatccat
      781 ggttattcat tgtgatgatg gaggcggagg tcgacctatt gtttccaatg gcattaaagt
      841 agtttgttcc atgaggttta ggatactcat tggagccttc tttgtcgggc ttaggataag
      901 gattaacta
//