LOCUS JO231079 909 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c44134_c mRNA sequence. ACCESSION JO231079 VERSION JO231079.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 909) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 909) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..909 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 194 a 222 c 278 g 215 t ORIGIN 1 aacaagtgac ctttctcgcg cagatactgg agggggtggc tcgctcgttc cagggggggg 61 agattgtgtg gccgcctacg gacccgcaag ttctcgtcga cctcaaacag gatgtggagg 121 cacgtgacgg ggaaggccag ctggatgaca cattccttgc aactgtctcc gcacagctgc 181 gccaggcggt ggagagaggc gacaggccgg ggctggtggc aatgctgcag aaggtgctgc 241 agctcgtcgc cgcacaccga ttcggcaaga gctcgtacgc agtgaaggcc gatggctctg 301 tggatgaggc ggagaagctt ctagaagacg tgctcgcagc gcccgaggag gagtgggacg 361 cactcctgcg ctcgggcctc gcgcttggag gcggcgctgt gcctacagac gacttctttg 421 ccgccctcaa caaacgatcg cagcgcatgt tcatgaggac ggagagtggg tcttacgagc 481 aacgcatcct tggcgagtat ttgaaggagg tggagcttcg agctacagcc accgtggagg 541 ccttcaagtc tgcagcgaca tagtgactca tcggcctacg cgagcacttc gccctgccgt 601 gaaagcgtgg cattgttctt tttaagcacc tttgcccctt tgagaaactc tccacggctc 661 atgggcccct acaattgagt tgagttatga tttgttacat catccaaggt gtgcaagcca 721 aagagtaatg aagcttttgc tatagaatgt tttctagtcc ttttaagcat gcttatccat 781 ggttattcat tgtgatgatg gaggcggagg tcgacctatt gtttccaatg gcattaaagt 841 agtttgttcc atgaggttta ggatactcat tggagccttc tttgtcgggc ttaggataag 901 gattaacta //