LOCUS JO228576 812 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c32720_c mRNA sequence. ACCESSION JO228576 VERSION JO228576.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 812) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 812) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..812 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 186 a 196 c 218 g 211 t ORIGIN 1 cgtcaccggc cgacccgcaa aggcgacaac agccccacgc tgctcagtag aggccattga 61 ttggtaccat tgcgggcgga cattgttgcc gatccatttg agtgcaggtt caccggtgca 121 agtgcactgg tgcaagtgca gtggtgcaac aggagattct ggttgtgtgt ggcagtccat 181 gcccacccaa tcaacatggt gcgagcgcag gtgctctgcc acacaacgct ccttaccgga 241 ccagtcgaat ctctgccccc cttttgcgtt cagcaacgac gctcgaaatc gattcctttg 301 gcactttggt atttatgggc acagcggcat cagcaaarca tggtctgcga gtgacgattg 361 ctgagcaccg gcagtgctgt gtggacacct gtgaactagg tggaagcgcc cactgctttt 421 tctcacacgg actgcgaggt tctcagagga cttagatttt ctgaaggttt cgtgtgttcc 481 tttcagaggg gaattatttg gctcaaatgg ttggtactcc ctttcaaacc aatggtggtc 541 tttctgttga ggtcatcctg aacgttagac aacagctgac agtagcctta gagacggcct 601 tttcggcagt aatttggaca gaggcattca tatgtctcag aaagacatgg aggctacgga 661 gtgtaccaag gacaaggaca gattttgaat tcaaaattgc tgaacctaac gatgtagtag 721 ggatctggct tttgcccatg cccatggatg tgatccataa ctattccctg agtattgtaa 781 tgagttctca acaagaggtg cgtttgcctt tg //