LOCUS       JO228368                 460 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c32177_c mRNA sequence.
ACCESSION   JO228368
VERSION     JO228368.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 460)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          102 a          104 c          171 g           79 t
ORIGIN      
        1 agcgctgctg cttctgtagc agcagcagga gcagcagcgg cggctgcagc agcagcctct
       61 gggcaaagcg gcggtggggg gagcaccact ggcgcagcag gtgctccttc acgggggssa
      121 ctcaagtttg ggtttgggag gcggaggtgg gaggccagca agggcaagat ggcattcaac
      181 gctgtgggaa agaagggtgg gcgtcctctc gtgcgaaacc gtcaaagcct gtggcatcca
      241 ttttttggag atgctggaag cgacgacgaa gacgactgag ccgagagagc agctgcaacg
      301 gcaggaaaat gggatgccaa gctggcgaaa gcagctgcaa gggcaggacc ttgggacgca
      361 gagcaggtga cacagcttgc tgagtttcca tactctgttg catggccgac agattgtgct
      421 ttgngcgttc aatgggattg taagngtgag caccggcggg
//