LOCUS       JO228297                 491 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c32006_c mRNA sequence.
ACCESSION   JO228297
VERSION     JO228297.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          122 a          119 c          150 g          100 t
ORIGIN      
        1 tgctcgtgag ggggcctccg ggtctggcct ggctgaaggg cagcgctgga ggagggcttc
       61 ctcgacgccg caaggtgacc aagaccaagg tgaagagccg atggggcgga gtggttggag
      121 caggcgcgca ccaccaagtg tgaatgtgtg ggggaaggca aacacacgtc acaccacgcc
      181 atgcatgaca tggcaccacg gctcggtaca acgttcacgt gacagggttg gagacaacgc
      241 cacgcacaag tggtccattg gcgttcttag attgtctggg agtttcattg tttttttatg
      301 taatgcagtt taagcgttgc tcacaaattg aatagatgtt gtgaccacag atcggcacag
      361 cctagtacat gaaccaccca acaccgcgga agaaaatatg gaattacatc tcacgcaact
      421 aatcctaatc ccacagacgg tgatagcgga ggtctggtgt cccatgatgg tacttccgcg
      481 aggcagtgga g
//