LOCUS JO228290 758 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c31990_c mRNA sequence. ACCESSION JO228290 VERSION JO228290.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 758) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 758) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..758 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 185 a 210 c 188 g 175 t ORIGIN 1 atcacttcta cattgacata ggaaaggaac atgaaatgct ttgcgtttga atgaggagac 61 agactcgaca acccatctac gacaagtccg tctgcacttt caagttttgt ttacaaaaat 121 ttgctttttc atctgactcg ttggagcata gtctcatcct cttccaccat gatttggaaa 181 tcctgctcct cctccatcgc agccaccaga ttttggatcg ctcaagtgct cctcactctc 241 tgcaacaatg acgtcgccgg ttgatgggtc ccggaaggca aggaagagca gtgggtcgaa 301 cggagtgtac accgaatagc gcttcccctt ttgttggtag gtaagtagta gtgatttcga 361 cgccttccga cagattccca ccgaaaccga ggccaaactc tgcagtgacg ctggtgacgt 421 catcctcact gaagcacaca gcgcctcgca ccgtcagaac gtacccagac atgatgaggt 481 ggaagttctt cttcgctaga gcgtaagcga gcgtgccaca gatctccttc acctcctcgt 541 cgtccacctc aatgagtccg cctgtctgct cgttgatgcg gaagacgagg atgggcacgt 601 cgagcgggta gagaaggaag aactgaaggc cagactcagc gaagaaaggt gcggcggatt 661 acacactcta gcggcctttg cagaactggg tctgtcagtg tgaggagccg ccgttctgca 721 ggcgcaacca acaccacctc tccatcatcg tccacaat //