LOCUS       JO228050                 737 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c31484_c mRNA sequence.
ACCESSION   JO228050
VERSION     JO228050.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          132 a          265 c          208 g          132 t
ORIGIN      
        1 caatttgcct tgactgaata atcgtctttg ttgaattgcg ccggcttgta cctcgccaca
       61 actccaatca ccacaagtgc acaggcgcca tggactctta cccagtgaaa gcggcagaat
      121 tgcggtcagc cctggaggac cttgcattcc gctggcagcg cgacgacggc gacgacggcg
      181 actgcgaatc ggacagctcc gcatccgact gcacgtccga gtggtcctac tcgtccgcag
      241 actacgccaa cgagcacgac ctgctggatc tcgacgagtt catggcgcgc tgtcagtggg
      301 actcagccct agccctccac gacgatgaat cgacggacga caattgtcac accgtcgacg
      361 actgcaccgc cagcagccac ggggccagca gcagtggctg ctcctctcgc cgctcttcct
      421 cctcctgcag cgtcgccatc cgaagcgacg gctccgcttc cctctcgcgg tcgtcgcggc
      481 gggcgtccgg ctgctcgtcc gtgtccgaat ggcgggagga tggctccagc ctcagcctga
      541 gctgggagca gctggagcgg cagtgcgtgg cgctggacgc cgacggcgtc cgcatcagtg
      601 ccatggacct caccacgctg ctgcagcagt agcagcagca tgcggactcg cctcctcttc
      661 cctctctctc tccaacaccc gcccccgtac gccaactgct ggcaatcgcc tcctccgcaa
      721 gcgagcgaat gcgcatg
//