LOCUS JO228050 737 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c31484_c mRNA sequence. ACCESSION JO228050 VERSION JO228050.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 737) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 737) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..737 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 132 a 265 c 208 g 132 t ORIGIN 1 caatttgcct tgactgaata atcgtctttg ttgaattgcg ccggcttgta cctcgccaca 61 actccaatca ccacaagtgc acaggcgcca tggactctta cccagtgaaa gcggcagaat 121 tgcggtcagc cctggaggac cttgcattcc gctggcagcg cgacgacggc gacgacggcg 181 actgcgaatc ggacagctcc gcatccgact gcacgtccga gtggtcctac tcgtccgcag 241 actacgccaa cgagcacgac ctgctggatc tcgacgagtt catggcgcgc tgtcagtggg 301 actcagccct agccctccac gacgatgaat cgacggacga caattgtcac accgtcgacg 361 actgcaccgc cagcagccac ggggccagca gcagtggctg ctcctctcgc cgctcttcct 421 cctcctgcag cgtcgccatc cgaagcgacg gctccgcttc cctctcgcgg tcgtcgcggc 481 gggcgtccgg ctgctcgtcc gtgtccgaat ggcgggagga tggctccagc ctcagcctga 541 gctgggagca gctggagcgg cagtgcgtgg cgctggacgc cgacggcgtc cgcatcagtg 601 ccatggacct caccacgctg ctgcagcagt agcagcagca tgcggactcg cctcctcttc 661 cctctctctc tccaacaccc gcccccgtac gccaactgct ggcaatcgcc tcctccgcaa 721 gcgagcgaat gcgcatg //