LOCUS       JO227845                 617 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c31057_c mRNA sequence.
ACCESSION   JO227845
VERSION     JO227845.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          119 a          154 c          179 g          165 t
ORIGIN      
        1 ccactcttgc cctctcaccc caaccccaga ctccctggct gtcacggagg cgcctcgcgt
       61 tgcataaaca catgcatgtg cactcccttt tcgatgcttg aaacggagtg gtgcggtggg
      121 tgtgtttgca gatgggagct tttccagatg tggagcattg gatagcacca aggatcgcgt
      181 ttgtggctgc cgtggtactg acctgtttgc cgagcgcagt ttggagcttg aggacagcca
      241 gaaggaggac cagggcgcga aggcatgggg ttcacgggcc ctcgactctc atgcctgtgt
      301 ttgcacagtt cctgcaggcg catgctacac acttaggtgt gaagcacagt tagcaccatg
      361 cttggttctg cggcgtagac ccatgcatgg atgggtacag accatgcctg aggcagcctg
      421 atggcggtgc ctagcgagcc attctcacgc atggcatgcg tgcatgtcgg cccaaaattc
      481 ggaatcaggg actgcttatt tatctgctgt gtatgtgaat gatggtcgtt gaagacttcg
      541 tcaattttga tagcccctgg ggttggttgt ttgtagcttt cactatttct ttacctatgt
      601 taacaactga ctgtttg
//