LOCUS       JO227771                 704 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c30888_c mRNA sequence.
ACCESSION   JO227771
VERSION     JO227771.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          138 a          186 c          270 g          110 t
ORIGIN      
        1 caatgcaaca ccgcggtacg gaccaaagtt ccatgcaccc tagtcttcac ccaacgacgc
       61 cggtcgcaaa gttgacgcgc ttcacatcgg acccagcact gtggtattgg aacccaggca
      121 cgggcgtctg cgcaaactgt gcggcagtga gggcggggcc cttggcgaag gtgacgcact
      181 ggcggccagt ggtggtgagc tgaacgccga agcgcatggc cacggtggag ccgtcaggca
      241 cctccactgt ggggctgccc accgtgaacg cattggtggg cgtcgccagg gccttcccca
      301 tgacatagga cttggcaatg aaggggcgaa cggcgatctg cgctggattg gcgccgttgg
      361 cgtagcccat gaggacctgc gagttgagca tggcacagga gggggagagg ccaaacccaa
      421 tccacccgta ggattcggag gtggaggcac gcacgatggg cattggctgt cttgccagag
      481 agggtccagg agagggtcac gccggaacca aggttcacgc agaaggactg gggcacggtg
      541 acgccaccga aggtgtctgt gcaacccccc gccgggggcg gagacttggg cgtcaagggc
      601 ggtgacttgg ggcttgcagg cggggacctg agaggggggc tccctaggag ggggattttg
      661 gggaggggga ggctctttgg gggggaggat tttggcagga gacg
//