LOCUS       JO227568                 523 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c30453_c mRNA sequence.
ACCESSION   JO227568
VERSION     JO227568.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT           82 a          168 c          174 g           98 t
ORIGIN      
        1 cttcgctgcg cacaggaatg tccacagcct tcacgctgca tggcagcctt ggctttggct
       61 tggccgccgc tgagcccaca gcagtggttg cgctatctgt gcctgtagct gtggctgcat
      121 ccgtggccga gcttgtgttt gttgttgtgg ttgtgcttgt gcttgtggtc gcgtccgttg
      181 gcgacagcag cgccagcact gaccgcgccc acctagacgt ccacccgcgc tgtgcacctg
      241 cggctggggc ttccgggaac gaagaaaatc cctgcgtcag cgcaccgcgc gcgcctcctc
      301 cggaaagagc gagcatcacc gccatcgtca gcgcgagagc cgcaaatgag acggccgaag
      361 cgtcccggct cgcgccgccg ccgaagcggc aagcgtggag ccgtgcgctc atggctgcct
      421 gcgcaggtcg ctcgtctgcr acgcggttga aaggcacaga gaatggaggt ggcttgtcgg
      481 cgtcggggac ggctgtgctc ctcacagtag cacggcagac aca
//