LOCUS JO227568 523 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c30453_c mRNA sequence. ACCESSION JO227568 VERSION JO227568.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 523) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 523) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..523 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 82 a 168 c 174 g 98 t ORIGIN 1 cttcgctgcg cacaggaatg tccacagcct tcacgctgca tggcagcctt ggctttggct 61 tggccgccgc tgagcccaca gcagtggttg cgctatctgt gcctgtagct gtggctgcat 121 ccgtggccga gcttgtgttt gttgttgtgg ttgtgcttgt gcttgtggtc gcgtccgttg 181 gcgacagcag cgccagcact gaccgcgccc acctagacgt ccacccgcgc tgtgcacctg 241 cggctggggc ttccgggaac gaagaaaatc cctgcgtcag cgcaccgcgc gcgcctcctc 301 cggaaagagc gagcatcacc gccatcgtca gcgcgagagc cgcaaatgag acggccgaag 361 cgtcccggct cgcgccgccg ccgaagcggc aagcgtggag ccgtgcgctc atggctgcct 421 gcgcaggtcg ctcgtctgcr acgcggttga aaggcacaga gaatggaggt ggcttgtcgg 481 cgtcggggac ggctgtgctc ctcacagtag cacggcagac aca //