LOCUS JO217827 632 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c13710_c mRNA sequence. ACCESSION JO217827 VERSION JO217827.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 632) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 632) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..632 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 160 a 206 c 130 g 136 t ORIGIN 1 tcaaccacac atccaaccaa gccgccacga cctcgcgcga agaattacaa caaaatggcc 61 ctcaagagga tcaacaaaga gttgcaggat cttcaacgcg acccgcccac aaactgcagc 121 gctggccctg tcggcgacga cctcttccac tggacggcta ccatcatggg accgcccgac 181 agcccgtatc agggtggcgt cttcttcctt aacattcact tccccacaga ctaccccttc 241 aagcctccca aagtaaactt cacaaccaag atctaccacc ccaacgttaa tggcaacggt 301 agcatttgcc tcgacattct gaaggaccag tggagccctg ctcttactat ctcgaaagtg 361 ctgctctcca tctgctctct gctcaccgac cccaacccag atgatcctct tgtgcccgag 421 attgcccaca tctacaaaac cgataggtcg aggtatgaaa acacggctcg ggaatggacg 481 cgcaagtacg ccatgtaagc tacgttcttt cggaagatgt agatcaagtg cggcgctacc 541 tctctgttac cctacccagc tctatctgta gggacttccg gaatcatgat catgcgcctt 601 gtccgcgtta atgatcgtgt tagaacacct tt //