LOCUS JO217549 1047 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c13299_c mRNA sequence. ACCESSION JO217549 VERSION JO217549.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 1047) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 1047) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1047 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 205 a 267 c 270 g 301 t ORIGIN 1 ggtccatgac actctttagg ctgttcaggc ctcagttgtc ttctgctttc gcataattca 61 gtatttgcag cttttgacac ttgtgcttat gatgctagct aacccgtcgt tgttcttacc 121 tccacctgtg tgtgttaatg aattagctgg ccagcttgta ctgttgtgtc agcgacaaca 181 gtgctaggaa gctattcttc atgttatcag agcaacgagc tagtgctcgc atagatgcgt 241 agcagaggca tagcaatcgt aatcgcgttc agtgaccgca gttgttgcct tgagtagcag 301 cagtagcaac gccccctatc tcagtgagag gtcctgcgag gacacaccac cgttctgacc 361 attttttgaa gaaatccgtg acgtttctgc agccattccg cggcagcagc agccgctttg 421 tgttggttct tgcacatctc tcattgtgct ctgttgtgtc ctccckgctt gtgtacatcr 481 gcgtgcagat gactgacggc gagactcgac gctgmtrgag tgtcgtccgt tggagccaac 541 gcacgctgag gcctaatcgc agtttgttgg agcctcctcc ctcaagcgac gtgctcagct 601 ccatcggcgg gcctcctcag cggtcgggcc gccggcggtc acagccactg cagatgctgt 661 gtgcatgctg gatctgattg tactattgcg tctgtagtgt cgtgctctgc ttagggtccg 721 agtctcatgt attttcacta ggaactagtg taggcactgc ctgggtttcg gcagccataa 781 ctctgtactg ctatttttct agctgattct aaccaaacga ctacgttcgt agcatcggta 841 ttaaggtatg gtgcagtttt caggcaaacg gacgacgcct gggtcttggg ttgtccgctg 901 tctggcacgg ctcatcgaca aaaccctgtc tgcaagaaaa gaggtctttt tcttgattga 961 ctggttagcc gagtaacaat cactacaaag ctggagagga gctaaacact tggaggggtc 1021 tcccattgtt gctcattctt cattcct //