LOCUS       JO217549                1047 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c13299_c mRNA sequence.
ACCESSION   JO217549
VERSION     JO217549.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 1047)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 1047)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          205 a          267 c          270 g          301 t
ORIGIN      
        1 ggtccatgac actctttagg ctgttcaggc ctcagttgtc ttctgctttc gcataattca
       61 gtatttgcag cttttgacac ttgtgcttat gatgctagct aacccgtcgt tgttcttacc
      121 tccacctgtg tgtgttaatg aattagctgg ccagcttgta ctgttgtgtc agcgacaaca
      181 gtgctaggaa gctattcttc atgttatcag agcaacgagc tagtgctcgc atagatgcgt
      241 agcagaggca tagcaatcgt aatcgcgttc agtgaccgca gttgttgcct tgagtagcag
      301 cagtagcaac gccccctatc tcagtgagag gtcctgcgag gacacaccac cgttctgacc
      361 attttttgaa gaaatccgtg acgtttctgc agccattccg cggcagcagc agccgctttg
      421 tgttggttct tgcacatctc tcattgtgct ctgttgtgtc ctccckgctt gtgtacatcr
      481 gcgtgcagat gactgacggc gagactcgac gctgmtrgag tgtcgtccgt tggagccaac
      541 gcacgctgag gcctaatcgc agtttgttgg agcctcctcc ctcaagcgac gtgctcagct
      601 ccatcggcgg gcctcctcag cggtcgggcc gccggcggtc acagccactg cagatgctgt
      661 gtgcatgctg gatctgattg tactattgcg tctgtagtgt cgtgctctgc ttagggtccg
      721 agtctcatgt attttcacta ggaactagtg taggcactgc ctgggtttcg gcagccataa
      781 ctctgtactg ctatttttct agctgattct aaccaaacga ctacgttcgt agcatcggta
      841 ttaaggtatg gtgcagtttt caggcaaacg gacgacgcct gggtcttggg ttgtccgctg
      901 tctggcacgg ctcatcgaca aaaccctgtc tgcaagaaaa gaggtctttt tcttgattga
      961 ctggttagcc gagtaacaat cactacaaag ctggagagga gctaaacact tggaggggtc
     1021 tcccattgtt gctcattctt cattcct
//