LOCUS       JO217376                 495 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c13050_c mRNA sequence.
ACCESSION   JO217376
VERSION     JO217376.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 495)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          109 a          121 c          135 g          130 t
ORIGIN      
        1 ggagagtatg actgcgacat ttcactagag cggctcgtca tccagaacgt cttcggcaat
       61 gtacaattgg gcgcttgctc actgtccgca cgatacgtcg tcttccgcaa caatgtgggc
      121 ccaaagggcg ttcttgcaac actcgactac tcgtcctcct atactggccc tgacatgttc
      181 ttccgctgtg attttgtcaa caacactgcg ctgtttggaa atgggggtgt gttcaacttt
      241 ggcaatccca acgggatgat tcagaccact ctgagcttct acaactgcac ctttcgcaac
      301 aaccgcgcgc tcagcggcat gggcggtgtg atctacggtg ccggaagtaa catgatcttg
      361 caaaactctg tctttgaggg aaactcagca ggtctgttgc atgcactcgg aggatgcttc
      421 cagagagggt gcgggaaact gtgagaattt tgggagaggt tatgtgtcca tgatcttgtt
      481 ttatgggaga cagtg
//