LOCUS       JO217040                2258 bp    mRNA    linear   TSA 23-FEB-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c12546_c mRNA sequence.
ACCESSION   JO217040
VERSION     JO217040.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 2258)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2258)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..2258
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          465 a          701 c          647 g          442 t
ORIGIN      
        1 kagagagaga gatattcata tagcaaatgg caaagacgtg ggaaggggca gagaaaggta
       61 tgcttctaat gaaggaaagc acccgctatg aatactacca gtcacttgcc tgtacacgac
      121 attccaggcg ccatggggaa aatctggaat gctgcatgac agacattgtt ctaggaaaga
      181 gtggtatgca aaaaagaaac tggatgcagt ggactatcaa cactgccgtc tgtaaagtgc
      241 agtgatctaa cacctctgct cgaggcactt ctcgtgctca tggcctcttt acgcgcgcag
      301 tcttagagat gctcgagttg atgacaccag actgcagcgc ctcagacctc atctcagcca
      361 ggaagtggct cgtagcagct cctaccccag agaaaaggtg gctcggaagc tgcaggaggt
      421 actcctgctg ccactgcctg gcgctcaaga gcatgaaacc agtacccttg cctgccaggc
      481 ttctgccaca gcatatcctc tcagagccct gcaaggctga gagcagcctg ccgcagccgc
      541 agcatgttgt acggatccgc cctggtggca tccttgctaa cgccaggggc tggcgtggaa
      601 ggcagcatgg tccaccaact gctgtctaac acaaactgaa acgacgatga cacgcgccga
      661 aacagatctt gcccaaaccc tagctgctcc tcctgcgatg aggcaacgtg caactgrggc
      721 aactgctggc ccttctggac ctggaagcgt tggtcgtgat gttggcattg ctcccgggct
      781 tgccgctggc cttccacctg catttctgac tctgcgctga caaccccctg ccggcaggtt
      841 gcgttttcag cgtcacaggc ctgcaccaat ccatcctctc cacttcctgc gtgggtactg
      901 ctcccagagc ttgcatcgct gctccgcgta catctcgtgg cggcgttaac cgcgcaccga
      961 ctgtcgccgc atcgcacgca atgcggaggg gtagccgctc ctgctgctga gcccccgcct
     1021 cgaagccgcc agaaagggcc tgctgctcct cctcctcctc cccaagaaaa agtgggcaac
     1081 ggcggcaacg ccgtcgcttc tcccgccgcc tgtcctgtgg atttcaggtt ccctgttgtt
     1141 cccgatacat tcggccagag gccgaggcca ttaatggcgt cggcaatcag aggcgacagc
     1201 aagggctgac gcgcagccac ccatggggtc cctaaggacc tcgtccatca acggccggag
     1261 atgcggctcg aagctgagca tccgacgaat gagatccttt gctgcaggtg aaattgtttt
     1321 ccagatgggc tttacgaagt tagcctccgc attgaaggat cgccttaggc cgcggcggaa
     1381 aatcggccag ctggagctca gcatggagta gaggacccac ggccccagag accacacgtc
     1441 agcagaaagg ccgtatgtat cgccaaggag gacttcgggc gcaacgtatg gctggctgcc
     1501 tgccaaaccg ctcgcctttt gtccttttgc aaggacgact gcaagcccga aatcaccmaa
     1561 gccgcacctc gacggaacta gcgggaccgt tccccccgtt gctgctgccg ctattcgtgc
     1621 tgcactttac accgccgctg ttgctctcgc cgttgctgcc ttcgctgctg ctcccgctgc
     1681 tcatgagaaa gacgttttct ggcttgacgt ctctgtgaat gacgccgcgc tcgtggcagt
     1741 ggctcagagc ggacgccaac tggcggaaga tggtgcgcgc ctcatcctcg ccgaggccgc
     1801 ccgtaccgcg cacgcgggac agcaacgagc cgccgtcgca ctgctccatg aggatgtacg
     1861 ccgcctcctc atcgcggtaa aggccctgaa gcgcaacgac gttggggtgg ccctgtgccc
     1921 tctggagagc gtcgatctca acggctgcgg tttccgctcg ttcgtacggg aggaggtcga
     1981 cgcgcttgca agcgaagagg cggcccgtgg agcgctcctg gtaagtggag acctggccgt
     2041 accgtccgtc gcccagacgc gagacgaact gaaagtcccg cgtaaggtcg tccgtggaca
     2101 atgcgttgtc caggaccttc gtcgacactg ggtttagtgt catggccggg gcggccatgg
     2161 ttacccgtac agggcgtgcc agacagttcg acctcagaac gttgacagtc actggagacg
     2221 tcgcaccccc caacgcaccg ctatgataca gatcagct
//