LOCUS JO217040 2258 bp mRNA linear TSA 23-FEB-2012
DEFINITION TSA: Penium margaritaceum pmar_71836_c12546_c mRNA sequence.
ACCESSION JO217040
VERSION JO217040.1
DBLINK BioProject: PRJNA68813
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Penium margaritaceum
ORGANISM Penium margaritaceum
Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE 1 (bases 1 to 2258)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), E29696 (2012)
PUBMED 22253761
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 2258)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Direct Submission
JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
University of Maryland, Bioscience Research Building, College Park,
MD 20947, USA
COMMENT Two-step clustering process: First, trimmed 454 reads were
clustered with MIRA v.2.9.43 using 454 EST assembly specific
parameters. Second, the raw Sanger reads were combined with the 454
contigs + singleons (with quality scores) and were cleaned then
clustered with CAP3 (100 bp plus 95 percent identity overlap).
##Assembly-Data-START##
Assembly Method :: MIRA v. 2.9.43; CAP3
Sequencing Technology :: 454 GS FLX Titanium; Sanger
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2258
/organism="Penium margaritaceum"
/mol_type="mRNA"
/strain="SKD2004_CL18"
/db_xref="taxon:102169"
BASE COUNT 465 a 701 c 647 g 442 t
ORIGIN
1 kagagagaga gatattcata tagcaaatgg caaagacgtg ggaaggggca gagaaaggta
61 tgcttctaat gaaggaaagc acccgctatg aatactacca gtcacttgcc tgtacacgac
121 attccaggcg ccatggggaa aatctggaat gctgcatgac agacattgtt ctaggaaaga
181 gtggtatgca aaaaagaaac tggatgcagt ggactatcaa cactgccgtc tgtaaagtgc
241 agtgatctaa cacctctgct cgaggcactt ctcgtgctca tggcctcttt acgcgcgcag
301 tcttagagat gctcgagttg atgacaccag actgcagcgc ctcagacctc atctcagcca
361 ggaagtggct cgtagcagct cctaccccag agaaaaggtg gctcggaagc tgcaggaggt
421 actcctgctg ccactgcctg gcgctcaaga gcatgaaacc agtacccttg cctgccaggc
481 ttctgccaca gcatatcctc tcagagccct gcaaggctga gagcagcctg ccgcagccgc
541 agcatgttgt acggatccgc cctggtggca tccttgctaa cgccaggggc tggcgtggaa
601 ggcagcatgg tccaccaact gctgtctaac acaaactgaa acgacgatga cacgcgccga
661 aacagatctt gcccaaaccc tagctgctcc tcctgcgatg aggcaacgtg caactgrggc
721 aactgctggc ccttctggac ctggaagcgt tggtcgtgat gttggcattg ctcccgggct
781 tgccgctggc cttccacctg catttctgac tctgcgctga caaccccctg ccggcaggtt
841 gcgttttcag cgtcacaggc ctgcaccaat ccatcctctc cacttcctgc gtgggtactg
901 ctcccagagc ttgcatcgct gctccgcgta catctcgtgg cggcgttaac cgcgcaccga
961 ctgtcgccgc atcgcacgca atgcggaggg gtagccgctc ctgctgctga gcccccgcct
1021 cgaagccgcc agaaagggcc tgctgctcct cctcctcctc cccaagaaaa agtgggcaac
1081 ggcggcaacg ccgtcgcttc tcccgccgcc tgtcctgtgg atttcaggtt ccctgttgtt
1141 cccgatacat tcggccagag gccgaggcca ttaatggcgt cggcaatcag aggcgacagc
1201 aagggctgac gcgcagccac ccatggggtc cctaaggacc tcgtccatca acggccggag
1261 atgcggctcg aagctgagca tccgacgaat gagatccttt gctgcaggtg aaattgtttt
1321 ccagatgggc tttacgaagt tagcctccgc attgaaggat cgccttaggc cgcggcggaa
1381 aatcggccag ctggagctca gcatggagta gaggacccac ggccccagag accacacgtc
1441 agcagaaagg ccgtatgtat cgccaaggag gacttcgggc gcaacgtatg gctggctgcc
1501 tgccaaaccg ctcgcctttt gtccttttgc aaggacgact gcaagcccga aatcaccmaa
1561 gccgcacctc gacggaacta gcgggaccgt tccccccgtt gctgctgccg ctattcgtgc
1621 tgcactttac accgccgctg ttgctctcgc cgttgctgcc ttcgctgctg ctcccgctgc
1681 tcatgagaaa gacgttttct ggcttgacgt ctctgtgaat gacgccgcgc tcgtggcagt
1741 ggctcagagc ggacgccaac tggcggaaga tggtgcgcgc ctcatcctcg ccgaggccgc
1801 ccgtaccgcg cacgcgggac agcaacgagc cgccgtcgca ctgctccatg aggatgtacg
1861 ccgcctcctc atcgcggtaa aggccctgaa gcgcaacgac gttggggtgg ccctgtgccc
1921 tctggagagc gtcgatctca acggctgcgg tttccgctcg ttcgtacggg aggaggtcga
1981 cgcgcttgca agcgaagagg cggcccgtgg agcgctcctg gtaagtggag acctggccgt
2041 accgtccgtc gcccagacgc gagacgaact gaaagtcccg cgtaaggtcg tccgtggaca
2101 atgcgttgtc caggaccttc gtcgacactg ggtttagtgt catggccggg gcggccatgg
2161 ttacccgtac agggcgtgcc agacagttcg acctcagaac gttgacagtc actggagacg
2221 tcgcaccccc caacgcaccg ctatgataca gatcagct
//